SRR3554375_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554375_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	205334
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3013	1.4673653656968646	No Hit
GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	849	0.41347268353024824	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG	759	0.3696416570076071	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC	743	0.3618494745146931	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC	723	0.3521092463985507	No Hit
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	382	0.1860383570183214	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	361	0.17581111749637177	No Hit
CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	312	0.1519475586118227	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCGAAAAT	244	0.11883078301693827	No Hit
TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC	213	0.10373342943691742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCGG	35	1.2054261E-7	45.000004	2
CGCATGG	35	1.2054261E-7	45.000004	2
CACGACC	30	2.1567666E-6	45.000004	27
TGTGCGG	30	2.1567666E-6	45.000004	2
GCGATGT	35	1.2054261E-7	45.000004	9
CCTAATA	20	7.0197415E-4	45.0	26
CTGACTA	20	7.0197415E-4	45.0	22
ACGGGAT	50	2.1827873E-11	45.0	5
CACTCTA	25	3.8795817E-5	45.0	10
TGCGCGC	25	3.8795817E-5	45.0	15
AATGACC	20	7.0197415E-4	45.0	14
CTACGGG	25	3.8795817E-5	45.0	3
TACGAAT	20	7.0197415E-4	45.0	12
AGACCTA	20	7.0197415E-4	45.0	32
CGAATGC	40	6.7684596E-9	45.0	45
CGAATAT	20	7.0197415E-4	45.0	14
CGTAAGG	25	3.8795817E-5	45.0	2
ACCCGTC	20	7.0197415E-4	45.0	39
GCTACGA	20	7.0197415E-4	45.0	10
ATAGTTC	25	3.8795817E-5	45.0	23