##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554375_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 205334 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.906936990464317 33.0 31.0 34.0 30.0 34.0 2 31.974758198837016 33.0 31.0 34.0 30.0 34.0 3 31.968787439001822 33.0 31.0 34.0 30.0 34.0 4 35.645046606991535 37.0 35.0 37.0 33.0 37.0 5 31.81594864951737 37.0 35.0 37.0 0.0 37.0 6 33.59307761987786 37.0 35.0 37.0 17.0 37.0 7 35.33949078087409 37.0 35.0 37.0 32.0 37.0 8 35.37357670916653 37.0 35.0 37.0 33.0 37.0 9 37.36890139967078 39.0 37.0 39.0 34.0 39.0 10 37.116030467433546 39.0 37.0 39.0 34.0 39.0 11 37.185293229567435 39.0 37.0 39.0 34.0 39.0 12 37.12693952292363 39.0 37.0 39.0 34.0 39.0 13 37.09852240739478 39.0 37.0 39.0 33.0 39.0 14 38.20177369553995 40.0 38.0 41.0 33.0 41.0 15 38.35901993824695 40.0 38.0 41.0 34.0 41.0 16 38.23831416131766 40.0 37.0 41.0 34.0 41.0 17 38.22677686111409 40.0 37.0 41.0 34.0 41.0 18 38.15296541244996 40.0 37.0 41.0 34.0 41.0 19 37.97551793663008 40.0 37.0 41.0 34.0 41.0 20 37.8792601322723 40.0 35.0 41.0 34.0 41.0 21 37.81771163080639 40.0 35.0 41.0 33.0 41.0 22 37.86110921717787 40.0 35.0 41.0 34.0 41.0 23 37.81212073986773 40.0 35.0 41.0 34.0 41.0 24 37.71915026249915 40.0 35.0 41.0 33.0 41.0 25 37.51232138856692 39.0 35.0 41.0 33.0 41.0 26 37.58988769516982 39.0 35.0 41.0 33.0 41.0 27 37.56147544975504 40.0 35.0 41.0 33.0 41.0 28 37.45585728617764 40.0 35.0 41.0 33.0 41.0 29 37.42107006146084 40.0 35.0 41.0 33.0 41.0 30 37.161103373040994 39.0 35.0 41.0 33.0 41.0 31 37.076217285008816 39.0 35.0 41.0 32.0 41.0 32 36.792099700974994 39.0 35.0 41.0 31.0 41.0 33 36.52749666397187 39.0 35.0 41.0 31.0 41.0 34 36.24173298138643 39.0 35.0 41.0 30.0 41.0 35 36.079981883175705 39.0 35.0 41.0 29.0 41.0 36 35.87870006915562 39.0 35.0 41.0 27.0 41.0 37 35.76643419988896 39.0 35.0 41.0 26.0 41.0 38 35.628916789231205 39.0 35.0 41.0 26.0 41.0 39 35.52261680968568 39.0 35.0 41.0 25.0 41.0 40 35.366870562108566 39.0 35.0 41.0 25.0 41.0 41 35.201856487478935 38.0 35.0 41.0 24.0 41.0 42 35.124538556693 38.0 35.0 41.0 24.0 41.0 43 35.01068990035747 38.0 35.0 41.0 23.0 41.0 44 34.918522991808466 37.0 35.0 40.0 23.0 41.0 45 34.810615874623785 37.0 34.0 40.0 23.0 41.0 46 34.63738591757819 37.0 34.0 40.0 23.0 41.0 47 34.47645786864329 37.0 34.0 40.0 23.0 41.0 48 34.423027847312184 36.0 34.0 40.0 23.0 41.0 49 34.35050697887345 36.0 34.0 40.0 24.0 41.0 50 34.24954464433557 36.0 34.0 40.0 24.0 41.0 51 33.44731510611979 35.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 6.0 11 2.0 12 6.0 13 5.0 14 12.0 15 23.0 16 24.0 17 43.0 18 78.0 19 165.0 20 286.0 21 539.0 22 840.0 23 1073.0 24 1607.0 25 2480.0 26 3351.0 27 3850.0 28 3713.0 29 3674.0 30 3652.0 31 4441.0 32 5556.0 33 7853.0 34 12782.0 35 16955.0 36 17598.0 37 25848.0 38 38543.0 39 50296.0 40 31.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.728588543543694 17.605462319927533 19.774611121392464 17.891338015136316 2 38.56399816883712 23.563559858571885 21.60090389316918 16.27153807942182 3 31.17360008571401 24.017941500189934 29.289352956646248 15.519105457449815 4 27.14309369125425 23.089697760721556 32.219213573981904 17.54799497404229 5 22.494082811419442 35.138359940389805 25.65283878948445 16.714718458706304 6 23.245054399174027 34.6045954396252 28.973282554277418 13.177067606923353 7 71.87898740588504 5.769137113191191 17.868448479063378 4.483427001860384 8 71.50106655497872 7.806305823682392 15.247353093009439 5.4452745283294535 9 65.41488501660709 7.623189535098912 17.80075389365619 9.161171554637809 10 36.86530238538187 24.013071386131863 24.761120905451605 14.360505323034664 11 29.3887032834309 24.346187187703936 29.304450310226265 16.960659218638902 12 25.819396690270484 21.17525592449375 33.23414534368395 19.771202041551813 13 24.439206366213096 23.25284658166694 34.65232255739429 17.655624494725668 14 20.086785432514827 27.588709127567768 32.86255564105311 19.46194979886429 15 19.337761890383472 23.302521745059266 37.988837698578905 19.37087866597836 16 21.235645338813836 22.959665715371052 34.96206181148763 20.842627134327486 17 21.440677140658636 23.103821091489962 33.16450271265353 22.290999055197872 18 22.220382401355838 22.16583712390544 34.09420748633933 21.51957298839939 19 22.939211236327157 23.125736604751282 32.077980266297835 21.857071892623726 20 24.93011386326668 23.38726172966971 33.224892126973614 18.45773228009 21 23.10236005727254 25.294398394810408 32.652653725150245 18.95058782276681 22 20.451069964058558 23.479793896773064 32.84697127606728 23.222164863101096 23 21.40756036506375 24.967613741513826 32.535770987756536 21.08905490566589 24 20.753017035658974 24.391966259849806 33.42505381476034 21.429962889730877 25 20.556751439118703 26.100402271421196 32.03853234242746 21.30431394703264 26 20.128668413414243 24.458686822445383 33.59891688663348 21.813727877506892 27 22.886126993094177 24.667614715536637 31.940643049860228 20.505615241508956 28 19.66844263492651 25.29050230356395 34.21693436060272 20.824120700906814 29 22.628984970828018 23.209502566550107 32.91904896412674 21.242463498495134 30 22.751224833685605 25.670371200093506 31.602657134230082 19.975746831990808 31 23.034665471865353 24.73677033516125 29.274255603066223 22.95430858990718 32 24.989529254775146 25.5812481128308 28.992763010509705 20.436459621884346 33 23.648786854588135 26.190986392901323 27.847312184051347 22.312914568459195 34 21.973954630017435 25.48725491151003 29.934156057934874 22.60463440053766 35 23.9814156447544 25.87199392209766 28.836919360651425 21.309671072496517 36 24.043753104697714 28.566141019022666 26.92345154723524 20.46665432904439 37 23.506579524092455 27.351534572939702 28.485297125658683 20.656588777309164 38 21.28045038814809 29.195846766731275 26.97069165359853 22.553011191522103 39 22.776062415381766 27.996337674228332 27.94033136256051 21.28726854782939 40 23.307878870523147 27.045204398687016 29.22945055373197 20.417466177057868 41 19.95285729591787 28.85299073704306 27.260950451459575 23.933201515579494 42 22.515511313274956 26.721828825231086 28.330427498612014 22.432232362881937 43 23.906902899665912 26.173453982292266 27.875071834182357 22.04457128385947 44 22.016811633728462 25.86274070538732 29.343898234096642 22.776549426787575 45 22.198953899500324 24.6788159778702 28.583186418225914 24.539043704403557 46 23.03661351748858 27.487897766565695 28.151694312680803 21.323794403264927 47 20.76714036642738 27.180593569501397 30.99876299102925 21.05350307304197 48 21.79424742127461 25.716150272239375 29.705747708611334 22.78385459787468 49 22.023629793409764 24.953003399339615 31.351846260239412 21.671520547011212 50 21.089541917071696 25.120048311531455 30.138213836968063 23.652195934428786 51 21.116814555796896 24.622809666202382 28.8490946457966 25.411281132204117 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 144.0 1 327.5 2 511.0 3 2988.5 4 5466.0 5 3590.5 6 1715.0 7 1673.5 8 1632.0 9 1620.0 10 1608.0 11 1526.0 12 1444.0 13 1448.0 14 1452.0 15 1359.5 16 1267.0 17 1181.5 18 1096.0 19 1080.0 20 1064.0 21 1166.0 22 1268.0 23 1324.0 24 1380.0 25 1346.5 26 1564.5 27 1816.0 28 2040.5 29 2265.0 30 2686.5 31 3108.0 32 3494.0 33 3880.0 34 4131.5 35 4383.0 36 4663.0 37 4943.0 38 5492.0 39 6041.0 40 6817.0 41 7593.0 42 8539.5 43 9486.0 44 10985.5 45 12485.0 46 14964.5 47 17444.0 48 17913.5 49 18383.0 50 18202.5 51 18022.0 52 16316.5 53 14611.0 54 13372.5 55 12134.0 56 11113.5 57 10093.0 58 9301.0 59 8509.0 60 7874.5 61 7240.0 62 6730.0 63 6220.0 64 5425.5 65 4631.0 66 3908.5 67 3186.0 68 2673.0 69 2160.0 70 2043.5 71 1927.0 72 1645.0 73 1363.0 74 1116.5 75 703.0 76 536.0 77 445.5 78 355.0 79 259.5 80 164.0 81 117.0 82 70.0 83 54.5 84 39.0 85 22.0 86 5.0 87 8.5 88 12.0 89 6.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 205334.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.47193353268333 #Duplication Level Percentage of deduplicated Percentage of total 1 75.64610802050024 33.6412868789387 2 8.700556309956633 7.7386112382752 3 3.545928424372509 4.730828796010403 4 2.106969205834684 3.7480397790916262 5 1.5900827894344913 3.5357028061597204 6 1.3217836961759166 3.526936600855192 7 1.0655306846554822 3.317034684952322 8 0.9122169170791536 3.245444008298674 9 0.816943361513864 3.26979457858903 >10 4.234745280126155 27.803481157528708 >50 0.03942354023391301 1.1639572598790262 >100 0.01423627841780192 1.3144437842734276 >500 0.004380393359323668 1.4970730614510992 >1k 0.001095098339830917 1.4673653656968646 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3013 1.4673653656968646 No Hit GCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC 849 0.41347268353024824 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCG 759 0.3696416570076071 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGC 743 0.3618494745146931 No Hit GAATCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTC 723 0.3521092463985507 No Hit CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT 382 0.1860383570183214 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 361 0.17581111749637177 No Hit CCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC 312 0.1519475586118227 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCGAAAAT 244 0.11883078301693827 No Hit TCTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGC 213 0.10373342943691742 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.19188249388800685 0.0 2 0.0 0.0 0.0 0.9589254580342271 0.0 3 0.0 0.0 0.0 1.206327252184246 0.0 4 0.0 0.0 0.0 1.5676897152931322 0.0 5 0.0 0.0 0.0 2.702426290823731 0.0 6 0.0 0.0 0.0 3.3160606621407074 0.0 7 0.0 0.0 0.0 3.9253119308054196 0.0 8 0.0 0.0 0.0 4.93780864347843 0.0 9 0.0 0.0 0.0 5.424820049285554 0.0 10 0.0 0.0 0.0 6.791374053980344 0.0 11 0.0 0.0 0.0 8.015233716773647 0.0 12 0.0 0.0 0.0 9.37107347054068 0.0 13 0.0 0.0 0.0 9.825455112158727 0.0 14 0.0 0.0 0.0 10.028538868380297 0.0 15 0.0 0.0 0.0 10.427888221142139 0.0 16 0.0 0.0 0.0 11.119931428794063 0.0 17 0.0 0.0 0.0 11.862136811244119 0.0 18 0.0 0.0 0.0 12.7221989538995 0.0 19 0.0 0.0 0.0 13.289080230258993 0.0 20 0.0 0.0 0.0 13.740539803442196 0.0 21 0.0 0.0 0.0 14.286479589351982 0.0 22 0.0 0.0 0.0 14.827549261203698 0.0 23 0.0 0.0 0.0 15.34524238557667 0.0 24 0.0 0.0 0.0 15.778195525339203 0.0 25 0.0 0.0 0.0 16.165369592955866 0.0 26 0.0 0.0 0.0 16.51893987357184 0.0 27 0.0 0.0 0.0 16.914393135087224 0.0 28 0.0 0.0 0.0 17.276242609601915 0.0 29 0.0 0.0 0.0 17.676565985175372 0.0 30 0.0 0.0 0.0 18.151889117243126 0.0 31 0.0 0.0 0.0 18.572179960454672 0.0 32 0.0 0.0 0.0 18.9910097694488 0.0 33 0.0 0.0 0.0 19.386463030964187 0.0 34 0.0 0.0 0.0 19.79555261184217 0.0 35 0.0 0.0 0.0 20.236297934097617 0.0 36 0.0 0.0 0.0 20.63710832107688 0.0 37 0.0 0.0 0.0 21.026230434316773 0.0 38 0.0 0.0 0.0 21.416326570368277 0.0 39 0.0 0.0 0.0 21.834669367956597 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGCGG 35 1.2054261E-7 45.000004 2 CGCATGG 35 1.2054261E-7 45.000004 2 CACGACC 30 2.1567666E-6 45.000004 27 TGTGCGG 30 2.1567666E-6 45.000004 2 GCGATGT 35 1.2054261E-7 45.000004 9 CCTAATA 20 7.0197415E-4 45.0 26 CTGACTA 20 7.0197415E-4 45.0 22 ACGGGAT 50 2.1827873E-11 45.0 5 CACTCTA 25 3.8795817E-5 45.0 10 TGCGCGC 25 3.8795817E-5 45.0 15 AATGACC 20 7.0197415E-4 45.0 14 CTACGGG 25 3.8795817E-5 45.0 3 TACGAAT 20 7.0197415E-4 45.0 12 AGACCTA 20 7.0197415E-4 45.0 32 CGAATGC 40 6.7684596E-9 45.0 45 CGAATAT 20 7.0197415E-4 45.0 14 CGTAAGG 25 3.8795817E-5 45.0 2 ACCCGTC 20 7.0197415E-4 45.0 39 GCTACGA 20 7.0197415E-4 45.0 10 ATAGTTC 25 3.8795817E-5 45.0 23 >>END_MODULE