SRR3554373_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554373_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	480510
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4316	0.8982123160808307	No Hit
GCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	1058	0.22018272252398494	RNA PCR Primer, Index 33 (96% over 27bp)
CCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	895	0.18626043162473205	Illumina PCR Primer Index 5 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT	743	0.15462737508064348	Illumina PCR Primer Index 5 (96% over 26bp)
CGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG	575	0.11966452311086137	Illumina PCR Primer Index 5 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC	512	0.1065534536221931	Illumina PCR Primer Index 5 (95% over 22bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	488	0.1015587604836528	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATACG	20	7.029183E-4	45.000004	1
TATACGG	30	2.1628548E-6	45.000004	2
CGATACG	20	7.029183E-4	45.000004	10
GCGTATG	20	7.029183E-4	45.000004	1
TAGCCGT	25	3.887406E-5	45.0	44
CGTTAGG	45	3.8380676E-10	45.0	2
TAAGCCG	25	3.887406E-5	45.0	1
CACGTGA	180	0.0	42.5	43
CGTTTTT	2100	0.0	42.107143	1
ACACGAC	205	0.0	41.70732	26
CACGACC	205	0.0	41.70732	27
ACGACCA	200	0.0	41.625	28
CGGGTCT	55	6.002665E-11	40.909092	6
AACACGT	195	0.0	40.384617	41
GCGTTAG	45	1.9243089E-8	40.0	1
GACACGA	205	0.0	39.512196	25
TCGGCGT	80	0.0	39.375004	4
CATACGA	75	0.0	39.0	18
CGGTAGT	105	0.0	38.57143	12
AAACACG	200	0.0	38.25	40