SRR3554372_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554372_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	327811
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3610	1.101244314559304	No Hit
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1511	0.46093633221581953	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	1234	0.3764364222066984	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG	1112	0.3392198553434754	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC	1107	0.3376945862097367	No Hit
CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT	720	0.21963875525836535	No Hit
CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	619	0.18882831875684464	No Hit
TCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	553	0.16869476619149448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGG	25	3.884684E-5	45.000004	33
AGCCGTT	25	3.884684E-5	45.000004	45
TAGCCGT	25	3.884684E-5	45.000004	44
GCTTACG	25	3.884684E-5	45.000004	1
ATGACGG	30	2.1607375E-6	45.000004	2
TTTGCGC	30	2.1607375E-6	45.000004	13
CTATCGT	20	7.025902E-4	45.0	37
CGTTATT	305	0.0	45.0	1
ATCGTCT	20	7.025902E-4	45.0	39
CCCTTCG	20	7.025902E-4	45.0	32
TATCGTC	20	7.025902E-4	45.0	38
TCGGTGC	20	7.025902E-4	45.0	36
TCTATCG	20	7.025902E-4	45.0	36
CGTTTTT	2350	0.0	43.276596	1
CGCGGGT	55	6.002665E-11	40.909092	4
ACGGGAC	55	6.002665E-11	40.909092	5
CTCTAAC	50	1.0768417E-9	40.500004	23
CGTTTTA	145	0.0	40.344826	1
AGGCGAT	40	3.448149E-7	39.375	7
CGAGGAT	40	3.448149E-7	39.375	4