SRR3554370_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554370_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	271764
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2829	1.0409767298096877	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	1033	0.3801092124048807	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	961	0.3536156370968929	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	908	0.33411342193962407	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	767	0.2822301702948146	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	313	0.11517345932500257	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGG	30	2.1593642E-6	45.000004	2
ACGGGTA	30	2.1593642E-6	45.000004	5
TCGTTTA	20	7.0237706E-4	45.0	38
CGCATCG	20	7.0237706E-4	45.0	21
GAATAAC	20	7.0237706E-4	45.0	9
CGTTCAT	25	3.882921E-5	45.0	17
TGCATAG	20	7.0237706E-4	45.0	1
AACGGGC	50	2.1827873E-11	45.0	4
CCCCGAT	25	3.882921E-5	45.0	40
TAGGGTC	20	7.0237706E-4	45.0	5
GACGGGT	35	1.2073542E-7	45.0	4
CGTAAGG	75	0.0	45.0	2
ACGTAAG	20	7.0237706E-4	45.0	1
AGTAACG	20	7.0237706E-4	45.0	1
GATAGCG	25	3.882921E-5	45.0	1
GTACGAG	25	3.882921E-5	45.0	1
CGTTATT	125	0.0	43.2	1
CGTTTTT	1310	0.0	42.080154	1
GCGAGAC	145	0.0	41.89655	21
CGTTTTA	70	0.0	41.785713	1