SRR3554347_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554347_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	495103
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3330	0.6725873202141777	No Hit
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	1022	0.2064216940717386	RNA PCR Primer, Index 27 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	569	0.11492558114170183	RNA PCR Primer, Index 38 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	40	6.8012014E-9	45.000004	25
TAGACGG	30	2.1629894E-6	45.000004	2
AACTTCG	20	7.029391E-4	45.000004	11
CTATACG	20	7.029391E-4	45.000004	1
TTAGACG	20	7.029391E-4	45.000004	1
ATCACGC	20	7.029391E-4	45.000004	9
GGTGCGT	20	7.029391E-4	45.000004	8
CTCGACG	20	7.029391E-4	45.000004	1
AATACGG	20	7.029391E-4	45.000004	2
GATAGCG	20	7.029391E-4	45.000004	1
TATACGG	45	3.8380676E-10	45.0	2
TCGACGG	35	1.2100463E-7	45.0	2
CGTTTTT	2240	0.0	41.886158	1
GCGATAT	65	0.0	41.53846	9
CTCACGA	45	1.9244908E-8	40.0	24
CGGTCTA	45	1.9244908E-8	40.0	31
ACGGTCT	45	1.9244908E-8	40.0	30
CGTTATT	160	0.0	39.375004	1
TAGTGCG	40	3.4528966E-7	39.375004	1
GACCGAT	230	0.0	39.130436	9