SRR3554340_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554340_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	733280
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13887	1.8938195505127646	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTT	1236	0.16855771328823915	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	1010	0.13773728998472615	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	887	0.12096334278856645	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	837	0.1141446650665503	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	835	0.11387191795766964	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	800	0.10909884355225835	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	757	0.10323478071132446	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTGCG	40	6.8084773E-9	45.000004	1
AATAGCG	20	7.031613E-4	45.000004	1
TCGGTCA	20	7.031613E-4	45.000004	12
TCGTAAG	25	3.8894188E-5	45.0	1
CGTTTTT	6645	0.0	42.83296	1
CCTCGTC	120	0.0	41.250004	36
GTTACGG	95	0.0	40.263157	2
CTCGTCC	125	0.0	39.600002	37
GTTTGCG	35	6.2451945E-6	38.57143	1
TCTACGG	35	6.2451945E-6	38.57143	2
GCGATCT	35	6.2451945E-6	38.57143	9
TCGACGT	35	6.2451945E-6	38.57143	26
TTCGACG	35	6.2451945E-6	38.57143	25
AGTGTCG	35	6.2451945E-6	38.57143	1
GCATACG	35	6.2451945E-6	38.57143	1
TTACGGG	190	0.0	37.894737	3
TCACGAC	60	1.546141E-10	37.500004	25
TCTAGCG	30	1.13951864E-4	37.500004	1
TGCGACG	30	1.13951864E-4	37.500004	1
TATCGAG	30	1.13951864E-4	37.500004	1