SRR3554339_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554339_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	474414
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2715	0.572284966295261	No Hit
GCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	1049	0.2211148912131598	No Hit
CCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	769	0.16209471052709237	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	757	0.1595652742119752	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCG	666	0.14038371548900327	No Hit
CTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGCT	659	0.1389082109718516	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGC	618	0.13026597022853456	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	498	0.1049716070773628	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	489	0.10307452984102491	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTCC	25	3.887331E-5	45.0	31
GTTAGCG	35	1.209919E-7	45.0	1
TTGCGAC	20	7.029094E-4	45.0	22
CGATCAT	20	7.029094E-4	45.0	10
CGAACGG	30	2.1627966E-6	44.999996	2
CGTTTTT	1465	0.0	41.467575	1
TAGACGG	40	3.4524965E-7	39.375	2
ACGGGTA	40	3.4524965E-7	39.375	5
AGTCCGA	30	1.13891176E-4	37.499996	33
CGAACGT	30	1.13891176E-4	37.499996	37
CGTTAGG	30	1.13891176E-4	37.499996	2
ATGAACG	30	1.13891176E-4	37.499996	1
TTAGGGA	365	0.0	36.9863	4
GTCGAGG	55	2.741217E-9	36.81818	2
TAGGGAC	325	0.0	36.692307	5
AGGGCGA	285	0.0	36.31579	6
TTAGGCG	25	0.0021058645	36.0	1
ACGTTGG	25	0.0021058645	36.0	2
TAACGCG	25	0.0021058645	36.0	1
AACGGGC	25	0.0021058645	36.0	4