SRR3554335_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554335_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	582851
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCG	3504	0.6011828065835008	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTC	3504	0.6011828065835008	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGC	3006	0.5157407296204347	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2104	0.3609841966471706	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1224	0.21000221325862012	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGATTACGT	780	0.13382493982166968	No Hit
GAACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	749	0.12850625631593665	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCT	686	0.11769731886880182	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTT	665	0.11409433971975684	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	25	3.8884315E-5	45.0	1
GTTTACG	20	7.0304226E-4	45.0	1
ACGGGTC	55	1.8189894E-12	45.0	5
ACGGGTA	35	1.2105556E-7	45.0	5
CTCGGTC	20	7.0304226E-4	45.0	12
GCGATAC	20	7.0304226E-4	45.0	9
GTTATCG	20	7.0304226E-4	45.0	1
AAATGCG	20	7.0304226E-4	45.0	1
CCGATGA	975	0.0	42.0	18
CGATGAA	1015	0.0	41.674877	19
CGAATGC	125	0.0	39.6	45
ATTCCGG	40	3.4543154E-7	39.375	2
ATTTGCG	40	3.4543154E-7	39.375	1
GATGAAT	1100	0.0	39.272728	20
TCCGCTA	35	6.24299E-6	38.571426	2
ACGTCGA	70	0.0	38.571426	41
CCACCGA	1185	0.0	37.974686	15
CGTCGAA	125	0.0	37.8	42
TGATCGG	30	1.1392319E-4	37.499996	2
GACGTAA	30	1.1392319E-4	37.499996	18