SRR3554334_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554334_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	405619
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCG	8050	1.9846210359968346	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGC	7629	1.8808290538658199	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTC	7279	1.7945411827355227	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2584	0.6370510257162509	No Hit
GCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	2491	0.6141231056730577	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCTGTTTT	1932	0.4763090486392403	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCT	1684	0.4151679285240583	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTA	1174	0.28943417344848243	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTC	1138	0.28055884956079474	No Hit
GAACTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCT	1109	0.27340928309571294	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	715	0.17627379388046419	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGCT	558	0.13756752025915947	TruSeq Adapter, Index 22 (95% over 23bp)
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCGCCTGTTTT	475	0.11710496796254613	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTT	437	0.10773657052554245	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGCTA	65	0.0	45.000004	30
CGCATGG	40	6.7957444E-9	45.0	2
TCTCGAG	25	3.8863276E-5	45.0	1
ATAAGCG	20	7.0278824E-4	45.0	1
GATGCGA	20	7.0278824E-4	45.0	9
GCGATCG	40	6.7957444E-9	45.0	33
GCAATAT	20	7.0278824E-4	45.0	9
GCTCGTC	20	7.0278824E-4	45.0	42
TTCGCGC	20	7.0278824E-4	45.0	21
CGATCGA	40	6.7957444E-9	45.0	41
CCGTTCG	25	3.8863276E-5	45.0	40
CGATCAC	120	0.0	44.999996	34
TTCGAAT	145	0.0	43.448273	43
CCGATGA	1720	0.0	43.29942	18
CGATGAA	1845	0.0	43.292683	19
TGAATGA	2015	0.0	43.213398	22
ATGAATG	2035	0.0	43.12039	21
GATGAAT	2040	0.0	43.014706	20
TCGAATG	235	0.0	42.12766	44
ACCCGTC	75	0.0	42.0	39