SRR3554332_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554332_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	603579
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	7245	1.2003399720666226	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG	6198	1.0268746924594792	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGC	5556	0.9205091628436376	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5175	0.8573856943333019	No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	2715	0.449816842534283	No Hit
GAACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	1586	0.262765934533839	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT	1436	0.23791417527780126	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTACTCGGT	1419	0.23509764256211696	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT	1279	0.21190266725648177	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTC	1179	0.19533482775245659	No Hit
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	966	0.160045329608883	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	955	0.15822286726344023	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTA	868	0.14380884689493836	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	811	0.13436517837764403	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	737	0.12210497714466541	No Hit
CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	635	0.10520578085055975	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGGT	30	2.1637825E-6	45.000004	28
CTATGCG	25	3.8885966E-5	45.0	1
ACGTTGT	20	7.030621E-4	45.0	16
GTTTACG	35	1.2106466E-7	45.0	1
TTGTCCG	20	7.030621E-4	45.0	24
GCCGATT	20	7.030621E-4	45.0	9
AATTGCG	20	7.030621E-4	45.0	1
CGGTCTA	20	7.030621E-4	45.0	31
ATACGGT	20	7.030621E-4	45.0	28
TAGTGCG	35	1.2106466E-7	45.0	1
CGCTTTC	20	7.030621E-4	45.0	5
GTACGAG	20	7.030621E-4	45.0	1
ACGGTCT	20	7.030621E-4	45.0	30
GCATACG	20	7.030621E-4	45.0	1
CGTTTTT	3065	0.0	43.311584	1
CGATGAA	905	0.0	41.519333	19
CCGATGA	885	0.0	41.18644	18
CTAACGG	55	6.002665E-11	40.909092	2
CCGTACA	55	6.002665E-11	40.909092	41
TACGAAT	110	0.0	40.909092	12