##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554332_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 603579 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.76435893230215 33.0 31.0 34.0 30.0 34.0 2 31.85952791598117 33.0 31.0 34.0 30.0 34.0 3 31.871985274504247 33.0 31.0 34.0 30.0 34.0 4 35.56809961910537 37.0 35.0 37.0 33.0 37.0 5 35.35347485581838 37.0 35.0 37.0 33.0 37.0 6 35.505845962169 37.0 35.0 37.0 33.0 37.0 7 35.84436668605104 37.0 35.0 37.0 35.0 37.0 8 35.69389094053968 37.0 35.0 37.0 35.0 37.0 9 37.460642268866216 39.0 37.0 39.0 35.0 39.0 10 37.062467382065975 39.0 37.0 39.0 33.0 39.0 11 37.069142564602146 39.0 37.0 39.0 33.0 39.0 12 37.122275625891554 39.0 37.0 39.0 34.0 39.0 13 37.12512860785415 39.0 37.0 39.0 33.0 39.0 14 38.30154627646091 40.0 38.0 41.0 33.0 41.0 15 38.36287544795296 40.0 38.0 41.0 34.0 41.0 16 38.32148401452005 40.0 38.0 41.0 34.0 41.0 17 38.251960389609316 40.0 37.0 41.0 33.0 41.0 18 38.175269517329134 40.0 37.0 41.0 34.0 41.0 19 38.062248686584525 40.0 37.0 41.0 34.0 41.0 20 37.93194594245327 40.0 36.0 41.0 33.0 41.0 21 37.92608258405279 40.0 36.0 41.0 33.0 41.0 22 37.977537323200444 40.0 36.0 41.0 33.0 41.0 23 37.872363021244944 40.0 36.0 41.0 33.0 41.0 24 37.88377494909531 40.0 36.0 41.0 33.0 41.0 25 37.71404240372843 40.0 36.0 41.0 33.0 41.0 26 37.719759965141265 40.0 36.0 41.0 33.0 41.0 27 37.62535972921523 40.0 36.0 41.0 33.0 41.0 28 37.502401508336106 40.0 36.0 41.0 33.0 41.0 29 37.428214036604984 40.0 36.0 41.0 33.0 41.0 30 37.243101565826514 40.0 35.0 41.0 32.0 41.0 31 37.18300007124171 40.0 35.0 41.0 32.0 41.0 32 36.96856086775716 40.0 35.0 41.0 31.0 41.0 33 36.80412671746366 40.0 35.0 41.0 30.0 41.0 34 36.62355217792534 40.0 35.0 41.0 30.0 41.0 35 36.46197763673024 40.0 35.0 41.0 30.0 41.0 36 36.28579191787653 40.0 35.0 41.0 29.0 41.0 37 36.204922636473434 39.0 35.0 41.0 29.0 41.0 38 36.11837555647231 39.0 35.0 41.0 28.0 41.0 39 36.046774324487764 39.0 35.0 41.0 27.0 41.0 40 35.95616149667235 39.0 35.0 41.0 27.0 41.0 41 35.88907500095265 39.0 35.0 41.0 26.0 41.0 42 35.868598808109624 39.0 35.0 41.0 26.0 41.0 43 35.73739808707725 39.0 35.0 41.0 26.0 41.0 44 35.75681228140807 39.0 35.0 41.0 26.0 41.0 45 35.7524118632358 39.0 35.0 41.0 26.0 41.0 46 35.624834528702955 39.0 35.0 41.0 26.0 41.0 47 35.4789083119194 39.0 35.0 41.0 26.0 41.0 48 35.44416223891156 39.0 35.0 41.0 26.0 41.0 49 35.428452613493846 39.0 35.0 41.0 26.0 41.0 50 35.27816574135283 39.0 35.0 41.0 25.0 41.0 51 34.39223034598619 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 7.0 9 2.0 10 24.0 11 9.0 12 10.0 13 19.0 14 16.0 15 44.0 16 75.0 17 108.0 18 250.0 19 460.0 20 1025.0 21 1973.0 22 3010.0 23 3982.0 24 5311.0 25 6793.0 26 8372.0 27 8916.0 28 8843.0 29 8869.0 30 9756.0 31 11727.0 32 14584.0 33 18947.0 34 30258.0 35 39876.0 36 43465.0 37 62254.0 38 111817.0 39 202586.0 40 189.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.8507983213465 18.243676469857302 22.113426742812457 14.792098465983742 2 34.19187877643191 27.801994436519493 22.58312499275157 15.423001794297017 3 28.328851732747495 28.641983899373567 28.55434002839728 14.474824339481659 4 25.237789916481525 23.745524612353975 33.964236661646616 17.05244880951789 5 28.191338664864084 27.02661954773112 26.862432258246226 17.91960952915857 6 23.328346413642624 36.211995447157705 26.670576676789615 13.789081462410058 7 74.68169038352892 4.473482344481833 16.652832520680803 4.191994751308445 8 74.54318324527527 8.955414287110717 11.812206852789775 4.68919561482424 9 67.92350297144202 7.617395568765646 13.534599447628231 10.924502012164108 10 32.987065487699205 33.00827232226436 20.498725104750164 13.505937085286268 11 25.683299120744756 23.239542793901048 33.221831773471244 17.85532631188295 12 21.724579549652987 20.689255259046455 35.836236847206415 21.749928344094144 13 24.028503311082723 22.290868303900567 37.39609893651038 16.284529448506326 14 19.80502966471663 28.768562193184323 32.17341888965653 19.252989252442514 15 17.653861383514005 24.140170549339853 37.808803818555646 20.397164248590492 16 20.686273047935728 24.88274111591026 31.35563033173785 23.075355504416155 17 20.734651139287482 25.121980718348386 32.29121622853015 21.852151913833982 18 21.880979954570982 22.384310918703267 33.07487503707054 22.659834089655206 19 20.62762289609148 25.102927702918755 30.919399117596868 23.350050283392896 20 22.975285753811843 24.914054332572867 32.91251020993109 19.19814970368419 21 21.625835226209 27.89030102107595 31.761376721191425 18.722487031523627 22 20.078067659742967 22.739028362484447 33.21321649692915 23.969687480843437 23 19.82921871039251 26.433822250277096 31.926392402651516 21.810566636678878 24 19.913383335072957 25.956668472561173 31.24959615891209 22.880352033453782 25 18.93936005063132 29.561996027032087 29.790632212187635 21.708011710148963 26 19.698995491890873 24.208098691306358 32.829836690806005 23.263069125996765 27 22.505256147082655 24.36748130733508 31.011681983634286 22.115580561947983 28 18.79654527410662 26.524116975574035 32.75064241797676 21.928695332342578 29 21.955203875549017 22.954575954431814 32.59192251552821 22.498297654490962 30 20.905465564573984 26.201541140430663 32.8001802580938 20.09281303690155 31 21.22621893737191 25.950869728734766 28.92396852773208 23.898942806161248 32 24.008953260467976 25.958656613301656 28.15936273462132 21.87302739160905 33 21.97028060949768 24.099579342554993 30.282365688667102 23.647774359280227 34 22.53176469028909 23.905901298752937 29.160225919059478 24.40210809189849 35 23.434214908073344 23.20922364760868 30.020925181293585 23.33563626302439 36 24.067106377127104 26.93052607860777 28.74669264503901 20.25567489922612 37 21.032872250359937 24.96574599182543 30.88676047377394 23.114621284040698 38 20.834389533101717 26.753747231099823 28.631877517276116 23.779985718522347 39 23.065911835898863 24.109188689467327 27.881023030953695 24.943876443680114 40 23.416321641408995 22.554793987199687 30.799447959587727 23.22943641180359 41 22.296832726122016 23.976645973435126 28.061281124757485 25.665240175685373 42 23.786115819138836 24.247364470930897 29.810844976382544 22.15567473354772 43 24.013923612319182 23.7509919993903 28.805508475278295 23.429575913012215 44 21.59535040152159 23.65473285187192 30.34085016211631 24.409066584490184 45 21.204680746016678 22.743170322360452 29.343466223973998 26.708682707648872 46 24.120454820330064 24.659903674581123 28.60851686357544 22.61112464151337 47 20.233473994290723 24.493396887565673 32.88583598832962 22.387293129813994 48 21.731206685454595 24.30137562771402 29.349264967800405 24.61815271903098 49 22.337589611301915 21.83094507926883 32.66995703959217 23.16150826983709 50 22.236360111932324 21.801785681741745 31.748122449588205 24.213731756737726 51 21.698899398421748 21.49677175647264 29.902133772049723 26.90219507305589 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 214.0 1 563.5 2 913.0 3 4740.0 4 8567.0 5 5879.5 6 3192.0 7 3020.5 8 2849.0 9 2863.0 10 2877.0 11 2837.0 12 2797.0 13 2827.0 14 2857.0 15 2709.0 16 2561.0 17 2443.0 18 2325.0 19 2318.0 20 2311.0 21 2526.0 22 2741.0 23 2850.5 24 2960.0 25 3491.5 26 4631.0 27 5239.0 28 6421.0 29 7603.0 30 8924.0 31 10245.0 32 11241.0 33 12237.0 34 14230.0 35 16223.0 36 17896.5 37 19570.0 38 20716.0 39 21862.0 40 23866.0 41 25870.0 42 27772.0 43 29674.0 44 32681.0 45 35688.0 46 38696.0 47 41704.0 48 59095.0 49 76486.0 50 68158.5 51 59831.0 52 57179.5 53 54528.0 54 45798.0 55 37068.0 56 32731.0 57 28394.0 58 25124.0 59 21854.0 60 19258.5 61 16663.0 62 14774.0 63 12885.0 64 11405.5 65 9926.0 66 8291.5 67 6657.0 68 5368.5 69 4080.0 70 3443.5 71 2807.0 72 2441.0 73 2075.0 74 1779.0 75 1172.5 76 862.0 77 668.5 78 475.0 79 376.0 80 277.0 81 178.5 82 80.0 83 56.5 84 33.0 85 18.0 86 3.0 87 6.5 88 10.0 89 5.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 603579.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.74355954387127 #Duplication Level Percentage of deduplicated Percentage of total 1 74.52530523239938 28.12850295564247 2 8.47420825404683 6.39693567647564 3 3.429530650543426 3.8832808294895225 4 2.1819318917395596 3.2941550510617508 5 1.579526281591663 2.980847213018226 6 1.2776683007519827 2.8934249752049572 7 1.0376636687928127 2.741558432871541 8 0.9259067465063053 2.795761313506629 9 0.8330753249712537 2.829890531932418 >10 5.634449100745252 34.037244163572645 >50 0.06378388405322293 1.6770661220211998 >100 0.02947255331558003 1.8128784262675484 >500 0.0030792219881949283 0.9186423969720987 >1k 0.00263933313273851 1.5962096519952569 >5k 0.0017595554218256732 4.013602259968103 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC 7245 1.2003399720666226 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG 6198 1.0268746924594792 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGC 5556 0.9205091628436376 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5175 0.8573856943333019 No Hit GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC 2715 0.449816842534283 No Hit GAACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT 1586 0.262765934533839 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT 1436 0.23791417527780126 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTACTCGGT 1419 0.23509764256211696 No Hit GAATGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTT 1279 0.21190266725648177 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTC 1179 0.19533482775245659 No Hit CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC 966 0.160045329608883 No Hit CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT 955 0.15822286726344023 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTA 868 0.14380884689493836 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 811 0.13436517837764403 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 737 0.12210497714466541 No Hit CGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG 635 0.10520578085055975 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6567839504025156E-4 0.0 0.0 0.16700382220057358 0.0 2 1.6567839504025156E-4 0.0 0.0 0.9553016258020905 0.0 3 1.6567839504025156E-4 0.0 0.0 1.3115101751386313 0.0 4 1.6567839504025156E-4 0.0 0.0 1.9377745083907822 0.0 5 1.6567839504025156E-4 0.0 0.0 4.062434246386968 0.0 6 1.6567839504025156E-4 0.0 0.0 5.04474145058062 0.0 7 1.6567839504025156E-4 0.0 0.0 5.952659055401199 0.0 8 1.6567839504025156E-4 0.0 0.0 7.234181441037545 0.0 9 1.6567839504025156E-4 0.0 0.0 7.795002808248796 0.0 10 1.6567839504025156E-4 0.0 0.0 9.820752544405952 0.0 11 1.6567839504025156E-4 0.0 0.0 10.976856384996827 0.0 12 1.6567839504025156E-4 0.0 0.0 12.91496225017769 0.0 13 1.6567839504025156E-4 0.0 0.0 13.444470400726335 0.0 14 1.6567839504025156E-4 0.0 0.0 13.686360857485102 0.0 15 3.3135679008050313E-4 0.0 0.0 14.138662875944988 0.0 16 3.3135679008050313E-4 0.0 0.0 14.754323791914564 0.0 17 4.970351851207547E-4 0.0 0.0 15.556869937489541 0.0 18 4.970351851207547E-4 0.0 0.0 16.46561593428532 0.0 19 4.970351851207547E-4 0.0 0.0 17.190293234191383 0.0 20 6.627135801610063E-4 0.0 0.0 17.714831032888817 0.0 21 6.627135801610063E-4 0.0 0.0 18.202256871097237 0.0 22 6.627135801610063E-4 0.0 0.0 18.767385876579535 0.0 23 6.627135801610063E-4 0.0 0.0 19.29722538391826 0.0 24 6.627135801610063E-4 0.0 0.0 19.716060366580017 0.0 25 6.627135801610063E-4 0.0 0.0 20.10623298689981 0.0 26 6.627135801610063E-4 0.0 0.0 20.525730683141727 0.0 27 6.627135801610063E-4 0.0 0.0 20.96742928431904 0.0 28 6.627135801610063E-4 0.0 0.0 21.35809893982395 0.0 29 6.627135801610063E-4 0.0 0.0 21.78455512865756 0.0 30 6.627135801610063E-4 0.0 0.0 22.288548806370002 0.0 31 6.627135801610063E-4 0.0 0.0 22.716827457549055 0.0 32 6.627135801610063E-4 0.0 0.0 23.118597565521664 0.0 33 6.627135801610063E-4 0.0 0.0 23.542071543244546 0.0 34 6.627135801610063E-4 0.0 0.0 23.976314616645045 0.0 35 6.627135801610063E-4 0.0 0.0 24.414202614736432 0.0 36 6.627135801610063E-4 0.0 0.0 24.8166354362892 0.0 37 8.283919752012578E-4 0.0 0.0 25.208299162164355 0.0 38 8.283919752012578E-4 0.0 0.0 25.610234948532007 0.0 39 8.283919752012578E-4 0.0 0.0 26.044312343537467 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCGGT 30 2.1637825E-6 45.000004 28 CTATGCG 25 3.8885966E-5 45.0 1 ACGTTGT 20 7.030621E-4 45.0 16 GTTTACG 35 1.2106466E-7 45.0 1 TTGTCCG 20 7.030621E-4 45.0 24 GCCGATT 20 7.030621E-4 45.0 9 AATTGCG 20 7.030621E-4 45.0 1 CGGTCTA 20 7.030621E-4 45.0 31 ATACGGT 20 7.030621E-4 45.0 28 TAGTGCG 35 1.2106466E-7 45.0 1 CGCTTTC 20 7.030621E-4 45.0 5 GTACGAG 20 7.030621E-4 45.0 1 ACGGTCT 20 7.030621E-4 45.0 30 GCATACG 20 7.030621E-4 45.0 1 CGTTTTT 3065 0.0 43.311584 1 CGATGAA 905 0.0 41.519333 19 CCGATGA 885 0.0 41.18644 18 CTAACGG 55 6.002665E-11 40.909092 2 CCGTACA 55 6.002665E-11 40.909092 41 TACGAAT 110 0.0 40.909092 12 >>END_MODULE