SRR3554331_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554331_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	904672
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8140	0.8997736196102012	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2332	0.25777298291535494	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1522	0.1682377701531605	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1493	0.1650321884616745	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	1403	0.15508383148809735	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	1208	0.13352905804534684	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1023	0.11307965759966042	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCG	945	0.10445774822256022	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGAA	45	3.8380676E-10	45.0	11
GTATACG	25	3.8901453E-5	45.0	1
TGTCGTG	20	7.03249E-4	45.0	40
GCGTAAG	65	0.0	41.53846	1
CGTTTTT	4310	0.0	41.397915	1
GCTACGA	50	1.0804797E-9	40.5	10
GCGTACG	40	3.457135E-7	39.375	1
GCCGATA	35	6.2468134E-6	38.57143	9
TGATTCG	70	0.0	38.57143	15
GCTTACG	35	6.2468134E-6	38.57143	1
ATAACGG	35	6.2468134E-6	38.57143	2
CTAACGG	65	9.094947E-12	38.07692	2
CGTCATA	30	1.13972994E-4	37.499996	38
TCTACGG	55	2.748493E-9	36.81818	2
TACGAGG	130	0.0	36.346153	2
TCGGCGT	280	0.0	36.160717	4
GTCGGCG	280	0.0	36.160717	3
TAGGGCG	375	0.0	36.0	5
CATACGA	50	4.8770744E-8	36.0	18
TTACGTA	25	0.0021068722	36.0	12