SRR3554330_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554330_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	680606
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6388	0.9385753284572865	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGC	3089	0.45386023631881	No Hit
GAATCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTC	3079	0.4523909574702545	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCG	2903	0.42653164973567675	No Hit
GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	1606	0.23596618307802167	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1164	0.17102405797186623	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATTAGACGT	1055	0.15500891852261073	No Hit
GAACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCT	867	0.12738647616976634	No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT	846	0.1243009905877997	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGCG	20	7.0312555E-4	45.000004	1
TAATGCG	20	7.0312555E-4	45.000004	1
CCGTCGA	65	0.0	44.999996	41
CATACGA	30	2.1641918E-6	44.999996	18
GCTACGA	30	2.1641918E-6	44.999996	10
CGAATGC	120	0.0	43.124996	45
GTCGAAT	100	0.0	42.75	43
CGTTTTT	3580	0.0	41.920387	1
TAAACGT	60	3.6379788E-12	41.249996	45
CCGATGA	800	0.0	41.0625	18
ACGTAGG	110	0.0	40.909092	2
CGTCGAA	105	0.0	40.714287	42
TACGCGG	50	1.0804797E-9	40.5	2
TAGTGCG	50	1.0804797E-9	40.5	1
GACGTAG	45	1.9263098E-8	40.0	1
GATCACC	90	0.0	40.0	35
AACGGGA	180	0.0	40.0	4
GATGAAT	890	0.0	39.943817	20
TCGAATG	125	0.0	39.6	44
GTTAGCG	40	3.4554432E-7	39.375004	1