SRR3554328_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554328_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	617418
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4194	0.6792804874493454	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1730	0.2801991519521621	No Hit
CTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGCT	1069	0.17314040083055562	No Hit
AAAGAAGGGGCATTATTTTTATTTACTTTTTTGTAAAGTGATTTCCAGTCT	890	0.14414869666903135	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	775	0.1255227414814599	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	654	0.10592499732758034	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACG	40	6.8066583E-9	45.000004	1
GCGCCTA	20	7.030746E-4	45.000004	9
ATTAACG	35	1.2107012E-7	45.000004	1
ATATGCG	20	7.030746E-4	45.000004	1
CTTATCG	20	7.030746E-4	45.000004	1
CGTAGCT	20	7.030746E-4	45.000004	45
CGAATAG	40	6.8066583E-9	45.000004	1
AATTCGT	35	1.2107012E-7	45.000004	31
TAGATCG	20	7.030746E-4	45.000004	13
TACTACG	20	7.030746E-4	45.000004	1
ACGTAGG	35	1.2107012E-7	45.000004	2
CGATAAG	35	1.2107012E-7	45.000004	1
GCCCGTA	20	7.030746E-4	45.000004	42
GGCCGAT	55	1.8189894E-12	45.0	8
TTCGTAA	25	3.8887018E-5	45.0	11
CGGATGA	25	3.8887018E-5	45.0	6
CATAGCG	25	3.8887018E-5	45.0	1
ACGTGCG	25	3.8887018E-5	45.0	1
CTCGAGT	25	3.8887018E-5	45.0	44
CGCACAG	50	2.1827873E-11	45.0	1