SRR3554323_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554323_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	854781
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3611	0.4224473871085108	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3000	0.35096708981598795	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1888	0.2208752885241951	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1550	0.1813329964049271	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1287	0.15056488153105885	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	986	0.11535118351952138	Illumina Single End Adapter 1 (95% over 21bp)
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	903	0.10564109403461237	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	40	6.8121153E-9	45.000004	1
ATTACCG	40	6.8121153E-9	45.000004	1
GTTAGCG	20	7.0322695E-4	45.000004	1
CGTTCGG	20	7.0322695E-4	45.000004	2
GCGTTAG	20	7.0322695E-4	45.000004	1
CGAATTA	20	7.0322695E-4	45.000004	10
CGCACGA	20	7.0322695E-4	45.000004	40
TATACCG	20	7.0322695E-4	45.000004	1
ATTACGC	25	3.889963E-5	45.0	25
TAGCACG	55	1.8189894E-12	45.0	1
TAGATCG	35	1.211447E-7	45.0	1
CGACCCG	30	2.1648466E-6	44.999996	32
CGTAGCG	30	2.1648466E-6	44.999996	1
TATCGCG	30	2.1648466E-6	44.999996	1
TACGAAT	120	0.0	41.249996	11
CGTATAG	50	1.0804797E-9	40.5	1
CACGACG	50	1.0804797E-9	40.5	1
CTCAACG	45	1.9272193E-8	40.000004	1
TACAGCG	45	1.9272193E-8	40.000004	1
TACCGCG	40	3.4568257E-7	39.375004	1