SRR3554321_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554321_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	486871
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5819	1.1951831183208694	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2277	0.4676803506472967	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1227	0.25201747485473563	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	1200	0.24647185804864122	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1026	0.21073343863158822	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	943	0.1936858017832239	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	846	0.17376265992429207	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	685	0.14069435230276603	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	652	0.1339163762064284	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	606	0.12446828831456382	No Hit
CTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACTC	560	0.11502020042269924	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	548	0.11255548184221283	No Hit
TGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	544	0.11173390898205068	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	538	0.11050154969180748	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	30	2.162913E-6	45.000004	1
GTATTCG	30	2.162913E-6	45.000004	10
CAACCCG	35	1.2099918E-7	45.000004	1
ATATGGG	140	0.0	45.000004	3
CGTTATG	30	2.162913E-6	45.000004	1
CCCAATG	30	2.162913E-6	45.000004	17
AAGCACG	35	1.2099918E-7	45.000004	1
TACAATC	35	1.2099918E-7	45.000004	36
CTAGCAG	45	3.8380676E-10	45.000004	1
TCACGAC	25	3.8874816E-5	45.0	25
AAGTACG	20	7.0292765E-4	45.0	1
CGTATAG	25	3.8874816E-5	45.0	1
GTTTCGT	25	3.8874816E-5	45.0	42
CGTGCGT	25	3.8874816E-5	45.0	12
CGTTGTA	20	7.0292765E-4	45.0	32
TAGGTAT	25	3.8874816E-5	45.0	14
CGTTGAG	40	6.8012014E-9	45.0	1
CTCCCGA	20	7.0292765E-4	45.0	20
CAACCGA	20	7.0292765E-4	45.0	42
CCAGCGA	20	7.0292765E-4	45.0	41