SRR3554320_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554320_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1116935
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3992	0.35740665302815294	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3247	0.29070626312184683	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2717	0.24325497902742774	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1405	0.12579066821256385	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1246	0.11155528298423811	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTGC	30	2.1654469E-6	45.000004	36
TATCTCG	30	2.1654469E-6	45.000004	1
CGTTTAG	30	2.1654469E-6	45.000004	1
AATCGCG	30	2.1654469E-6	45.000004	1
ATTACCG	35	1.2118835E-7	45.0	1
GACCGAA	20	7.0332014E-4	45.0	25
TATGCGA	25	3.8907354E-5	45.0	24
ATCGTAC	35	1.2118835E-7	45.0	28
CGTTACG	20	7.0332014E-4	45.0	1
AATTGCG	40	6.8139343E-9	45.0	1
TATTCGT	20	7.0332014E-4	45.0	33
GCGATCG	20	7.0332014E-4	45.0	9
TTACGGT	20	7.0332014E-4	45.0	31
TAGTCCG	50	2.1827873E-11	45.0	1
AATAGCG	110	0.0	42.954548	1
TACGTAG	90	0.0	42.5	1
CATACCG	80	0.0	42.1875	1
CCATGCG	70	0.0	41.785713	1
ACGATAG	60	3.6379788E-12	41.250004	1
CGTTCGA	55	6.184564E-11	40.909092	42