SRR3554318_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554318_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1023642
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5052	0.49353191838552934	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	4227	0.4129373355137831	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3139	0.3066501765265591	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1998	0.1951854261548471	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1911	0.18668636105200842	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	1670	0.16314297381311044	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1275	0.1245552644381532	No Hit
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1256	0.12269914677201599	No Hit
AGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAAGGAAGGTGAA	1087	0.10618946858374315	No Hit
CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT	1033	0.10091418679577431	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTAT	30	2.1652686E-6	45.000004	24
ACGTTGC	20	7.0329226E-4	45.000004	28
TAACGCG	30	2.1652686E-6	45.000004	1
TAACCCG	30	2.1652686E-6	45.000004	1
ATATACG	20	7.0329226E-4	45.000004	1
TCATGCG	30	2.1652686E-6	45.000004	1
TCGTATA	40	6.8139343E-9	45.000004	23
CGTAATG	20	7.0329226E-4	45.000004	1
CGTAACG	40	6.8139343E-9	45.000004	1
ATACGCA	20	7.0329226E-4	45.000004	32
TCGACCA	20	7.0329226E-4	45.000004	26
CGTTTAG	40	6.8139343E-9	45.000004	1
AAATGCG	20	7.0329226E-4	45.000004	1
CGCATAG	50	2.1827873E-11	45.0	1
TTAGTCG	35	1.2117562E-7	45.0	28
ATACGCG	25	3.890506E-5	45.0	1
GTTGCGT	25	3.890506E-5	45.0	42
TATACGG	90	0.0	42.5	2
TCAAACG	70	0.0	41.785713	1
TACGGGT	130	0.0	41.53846	4