SRR3554311_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554311_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	933291
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5405	0.579133410693985	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2397	0.25683307778602815	No Hit
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	1348	0.14443512259306046	Illumina Single End Adapter 2 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1126	0.1206483294063695	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1085	0.11625527300702568	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	973	0.10425472869662303	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAT	20	7.032603E-4	45.000004	44
GTTTCGA	20	7.032603E-4	45.000004	19
TAGAACG	20	7.032603E-4	45.000004	1
TAGCGGA	20	7.032603E-4	45.000004	3
CAACCCG	40	6.8121153E-9	45.000004	1
TACGGCA	20	7.032603E-4	45.000004	4
ATCACGC	20	7.032603E-4	45.000004	10
CGAATCC	20	7.032603E-4	45.000004	37
CGATACG	20	7.032603E-4	45.000004	1
CGATAAG	20	7.032603E-4	45.000004	1
TCGAATC	20	7.032603E-4	45.000004	36
GCCGTAA	20	7.032603E-4	45.000004	28
TAAACCG	25	3.89024E-5	45.0	1
TGCGATA	25	3.89024E-5	45.0	16
ATGGTCG	25	3.89024E-5	45.0	9
CATTACG	30	2.1650612E-6	44.999996	1
TATAGCG	105	0.0	42.857143	1
TTACGCG	85	0.0	42.35294	1
ATAGCCG	55	6.002665E-11	40.909092	1
GTATGCG	55	6.002665E-11	40.909092	1