SRR3554308_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554308_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	622568
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3212	0.5159275773891366	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2633	0.42292568843885325	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2060	0.33088754963313244	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1441	0.23146065971909896	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1374	0.22069878310481747	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1012	0.16255252438287868	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	752	0.1207900181185027	No Hit
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	729	0.11709564256434637	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGCG	25	3.8887374E-5	45.000004	1
ATAGCGG	120	0.0	45.000004	2
GTTAGAC	25	3.8887374E-5	45.000004	21
ACGATAG	30	2.1638916E-6	45.000004	1
AATTCGC	30	2.1638916E-6	45.000004	24
CATAACG	25	3.8887374E-5	45.000004	1
GTATACG	25	3.8887374E-5	45.000004	1
TATACCG	25	3.8887374E-5	45.000004	1
GGCTAAT	30	2.1638916E-6	45.000004	10
TAATACG	75	0.0	45.0	1
TACTTCG	20	7.030793E-4	45.0	28
CGAAACG	20	7.030793E-4	45.0	1
CGTAGCG	20	7.030793E-4	45.0	1
TCTCGAT	20	7.030793E-4	45.0	22
CGAGCGT	20	7.030793E-4	45.0	39
TTACGTA	40	6.8066583E-9	45.0	12
AATAGGT	20	7.030793E-4	45.0	22
ATACGCA	20	7.030793E-4	45.0	37
CCACGCG	40	6.8066583E-9	45.0	1
GATTACG	20	7.030793E-4	45.0	1