SRR3554307_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554307_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	608220
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3024	0.49718851731281444	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2604	0.42813455657492355	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1970	0.32389595869915494	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1380	0.2268915852816415	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1330	0.21867087566998783	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	960	0.1578376245437506	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	763	0.12544802867383512	No Hit
CTGTCTCTTATACACATCTGACGCGGCGAAAATCGTATGCCGTCTTCTGCT	675	0.11097957975732466	No Hit
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	622	0.10226562756897176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	20	7.030663E-4	45.000004	1
AACGTTG	30	2.1638098E-6	45.000004	1
CTTAACG	20	7.030663E-4	45.000004	1
CTATGCG	30	2.1638098E-6	45.000004	1
GATACGA	25	3.888631E-5	45.000004	19
CGAACGT	20	7.030663E-4	45.000004	38
GGTGTCG	20	7.030663E-4	45.000004	17
ATTAGCG	50	2.1827873E-11	45.000004	1
CGAAACG	25	3.888631E-5	45.000004	1
TCTTACG	25	3.888631E-5	45.000004	1
ATTCGTT	20	7.030663E-4	45.000004	6
TAACGCG	20	7.030663E-4	45.000004	1
TCTAGCG	30	2.1638098E-6	45.000004	1
ATCGTGA	20	7.030663E-4	45.000004	42
CGTTAGC	25	3.888631E-5	45.000004	9
CGTTACT	20	7.030663E-4	45.000004	8
ACGATAG	20	7.030663E-4	45.000004	1
CATAGCG	25	3.888631E-5	45.000004	1
CTACGCG	20	7.030663E-4	45.000004	1
ACGTCAC	20	7.030663E-4	45.000004	11