SRR3554306_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554306_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	644598
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4097	0.6355899335710008	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2433	0.3774445468338406	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1096	0.17002845184130264	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	795	0.12333268176444855	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	710	0.11014616861982197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGACG	30	2.1640117E-6	45.000004	1
TAGCACG	60	0.0	45.000004	1
GTTAACG	50	2.1827873E-11	45.000004	1
TACGAAG	30	2.1640117E-6	45.000004	1
GATATCG	25	3.8888917E-5	45.000004	39
AATTCGC	25	3.8888917E-5	45.000004	32
CATACCG	30	2.1640117E-6	45.000004	1
ACGCTAG	30	2.1640117E-6	45.000004	1
CAGTACG	25	3.8888917E-5	45.000004	1
GGTTAAC	30	2.1640117E-6	45.000004	9
AGTACGG	65	0.0	45.000004	2
GATCGCA	20	7.0309784E-4	45.0	9
ACATTCG	20	7.0309784E-4	45.0	13
ATAGCCG	20	7.0309784E-4	45.0	1
CGATTGT	20	7.0309784E-4	45.0	17
CACGACT	20	7.0309784E-4	45.0	33
CGTTAAT	20	7.0309784E-4	45.0	12
ATCCGAT	20	7.0309784E-4	45.0	21
CCCGTAG	20	7.0309784E-4	45.0	1
TCGTAAT	20	7.0309784E-4	45.0	45