SRR3554303_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554303_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	735244
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2859	0.38885050405035604	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2673	0.3635527797574683	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1502	0.2042859241285886	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1111	0.15110629940536746	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	794	0.10799136069114472	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	737	0.10023883227880813	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTA	20	7.031625E-4	45.000004	33
TCATACG	45	3.8380676E-10	45.000004	1
CGTTTCA	20	7.031625E-4	45.000004	23
CAATACG	20	7.031625E-4	45.000004	1
TCAACCG	45	3.8380676E-10	45.000004	1
CCCGATG	20	7.031625E-4	45.000004	1
TAATACG	25	3.889429E-5	45.0	1
CAAACGA	25	3.889429E-5	45.0	39
TAGCGCG	25	3.889429E-5	45.0	1
AACGACG	25	3.889429E-5	45.0	1
GCGATCG	35	1.2111377E-7	45.0	9
GTATCGC	25	3.889429E-5	45.0	40
GCGATAG	35	1.2111377E-7	45.0	1
TGTAGCG	25	3.889429E-5	45.0	1
CAGACGA	35	1.2111377E-7	45.0	30
CCAAACG	30	2.1644319E-6	44.999996	1
AATACGG	85	0.0	42.35294	2
CCGGGTC	70	0.0	41.785713	5
TTTACGG	70	0.0	41.785713	2
TCTACGG	60	3.6379788E-12	41.249996	2