SRR3554300_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554300_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1287441
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6832	0.5306650945557894	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2899	0.2251753672595482	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1691	0.1313458247795433	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1447	0.11239349997397938	No Hit
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT	1436	0.11153909188848264	Illumina PCR Primer Index 5 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCGTAG	45	3.8562575E-10	45.000004	1
CTCCGCG	35	1.2120836E-7	45.0	1
CGCGCGA	20	7.033603E-4	45.0	32
ATGTCGA	20	7.033603E-4	45.0	3
CGGATTA	40	6.8157533E-9	45.0	6
CGCTAAG	40	6.8157533E-9	45.0	1
CCGAACG	35	1.2120836E-7	45.0	1
GCGTAAG	40	6.8157533E-9	45.0	1
ATTACCG	50	2.1827873E-11	44.999996	1
ATCACCG	60	0.0	44.999996	1
AGACCCG	55	1.8189894E-12	44.999996	1
ACGTCCA	25	3.891069E-5	44.999996	24
TAGTGCG	25	3.891069E-5	44.999996	1
ACGGTAC	25	3.891069E-5	44.999996	5
AAGGGCG	160	0.0	42.1875	5
TATCGCG	70	0.0	41.785713	1
AATTCCG	65	0.0	41.53846	1
CGCTACG	55	6.184564E-11	40.90909	1
GCGTACG	55	6.184564E-11	40.90909	1
GAACGTA	50	1.0822987E-9	40.499996	9