SRR3554297_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554297_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1125397
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4106	0.3648490266101651	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3983	0.35391955016762977	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2043	0.18153593798455123	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1650	0.14661492788766986	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1312	0.11658108205371083	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1249	0.11098305753436342	No Hit
CTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGCT	1212	0.10769532884839751	Illumina Single End Adapter 2 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAC	20	7.0332224E-4	45.000004	43
CATTGCG	40	6.8157533E-9	45.000004	1
CACTCGA	35	1.2119017E-7	45.000004	17
AACTCGA	20	7.0332224E-4	45.000004	19
GCGTAAG	40	6.8157533E-9	45.000004	1
AAGTCGA	20	7.0332224E-4	45.000004	29
TAGGTCG	25	3.8907543E-5	45.0	13
CGATTTA	25	3.8907543E-5	45.0	10
CGATAAG	50	2.1827873E-11	45.0	1
TCGAACA	25	3.8907543E-5	45.0	44
CGACGAA	30	2.1654614E-6	44.999996	7
CCGAACG	30	2.1654614E-6	44.999996	1
GCTAACG	30	2.1654614E-6	44.999996	1
GTAACGG	135	0.0	43.333332	2
CGCATAG	65	0.0	41.53846	1
ACGCGAG	60	3.6379788E-12	41.249996	1
TAACGCG	60	3.6379788E-12	41.249996	1
TAGTGCG	60	3.6379788E-12	41.249996	1
ATTACGG	175	0.0	41.142857	2
CATTACG	50	1.0822987E-9	40.5	1