SRR3554296_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554296_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1025989
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4759	0.4638451289438776	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3444	0.3356761134865968	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2951	0.2876249160566049	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2230	0.21735125815189055	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	2220	0.21637658883282376	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2211	0.21549938644566366	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1386	0.13508916762265483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTATG	35	1.2117562E-7	45.000004	1
CATACGC	35	1.2117562E-7	45.000004	15
ATACGCG	65	0.0	45.000004	1
TCGTTAT	20	7.032932E-4	45.0	34
CTCGTTA	20	7.032932E-4	45.0	33
ATCGTCA	20	7.032932E-4	45.0	22
GTTACGA	20	7.032932E-4	45.0	12
CGTAGTA	25	3.8905124E-5	45.0	42
GTTCGAC	20	7.032932E-4	45.0	37
CGCTATA	20	7.032932E-4	45.0	1
CGTAGCG	40	6.8139343E-9	45.0	1
GTCCGTT	20	7.032932E-4	45.0	28
TCGTAAG	20	7.032932E-4	45.0	1
CGGTCTA	45	3.8380676E-10	45.0	31
TAAATCG	20	7.032932E-4	45.0	19
TATCGCG	40	6.8139343E-9	45.0	1
ATCGCAT	20	7.032932E-4	45.0	33
TAGTCCG	20	7.032932E-4	45.0	1
TACCGGA	40	6.8139343E-9	45.0	3
TACGCGG	155	0.0	42.096775	2