SRR3554294_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554294_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	646153
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3507	0.5427507107449783	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1580	0.2445241297339794	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1499	0.23198839903242732	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	1076	0.1665240275909885	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	787	0.12179777854471	No Hit
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	787	0.12179777854471	TruSeq Adapter, Index 21 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	30	2.1640208E-6	45.000004	1
GAATCGG	25	3.8889026E-5	45.000004	2
CGTTCAT	25	3.8889026E-5	45.000004	17
AATATCG	25	3.8889026E-5	45.000004	2
TAGCACG	25	3.8889026E-5	45.000004	1
CTACGCG	60	0.0	45.000004	1
ACTCGCG	45	3.8380676E-10	45.000004	1
AATTACG	25	3.8889026E-5	45.000004	1
CGTAACG	25	3.8889026E-5	45.000004	1
ACGTAGG	30	2.1640208E-6	45.000004	2
ACCCACG	25	3.8889026E-5	45.000004	1
ATACACG	30	2.1640208E-6	45.000004	1
AACGTTC	20	7.030992E-4	45.0	26
GTATTCG	35	1.2108285E-7	45.0	20
CTATACG	20	7.030992E-4	45.0	1
CAACCCG	20	7.030992E-4	45.0	1
GCGTTGT	35	1.2108285E-7	45.0	9
ATCGTAG	20	7.030992E-4	45.0	1
GTAATCG	20	7.030992E-4	45.0	9
AATTGCG	85	0.0	45.0	1