SRR3554293_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554293_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	628800
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3457	0.5497773536895675	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1510	0.24013994910941477	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1509	0.23998091603053434	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	1081	0.1719147582697201	No Hit
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	803	0.12770356234096694	TruSeq Adapter, Index 21 (95% over 22bp)
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	782	0.12436386768447838	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACG	20	7.030846E-4	45.000004	1
CGTGAGT	20	7.030846E-4	45.000004	11
CGACACG	40	6.8066583E-9	45.000004	1
GTCGTTA	20	7.030846E-4	45.000004	9
CGCAGTA	25	3.8887825E-5	45.000004	26
GTATACG	20	7.030846E-4	45.000004	1
CAATGCG	25	3.8887825E-5	45.000004	1
CAGTACG	20	7.030846E-4	45.000004	1
AATACCG	25	3.8887825E-5	45.000004	1
CCGTTCC	20	7.030846E-4	45.000004	17
AGTAACG	25	3.8887825E-5	45.000004	1
AATCGAG	25	3.8887825E-5	45.000004	1
TACCGGA	25	3.8887825E-5	45.000004	3
GATACGC	35	1.2107557E-7	45.0	11
GCATGCG	45	3.8380676E-10	45.0	1
CCAATCG	30	2.163928E-6	44.999996	19
TCGATAT	30	2.163928E-6	44.999996	44
AATTGCG	55	1.8189894E-12	44.999996	1
ACTAACG	30	2.163928E-6	44.999996	1
ATACGAG	60	0.0	44.999996	1