SRR3554292_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554292_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	653387
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5107	0.7816194690130045	No Hit
CTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGCT	1576	0.24120467655462996	Illumina PCR Primer Index 5 (95% over 24bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	942	0.1441718307832877	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	836	0.12794867360385193	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	744	0.11386819756132277	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG	711	0.10881759202432861	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTA	30	2.1640572E-6	45.000004	20
GCGGTTC	20	7.0310483E-4	45.000004	35
CTATCGT	20	7.0310483E-4	45.000004	14
ACACCGT	20	7.0310483E-4	45.000004	32
GACGTAG	40	6.8066583E-9	45.000004	1
ATAGCCG	40	6.8066583E-9	45.000004	1
CGATTGG	20	7.0310483E-4	45.000004	2
CGATTAG	20	7.0310483E-4	45.000004	1
TAGCCCG	20	7.0310483E-4	45.000004	1
ATCCGTT	20	7.0310483E-4	45.000004	20
GTAATCG	20	7.0310483E-4	45.000004	9
ATATCCG	40	6.8066583E-9	45.000004	1
CTACGTT	20	7.0310483E-4	45.000004	12
CGTAGCG	30	2.1640572E-6	45.000004	1
AGACCGT	30	2.1640572E-6	45.000004	14
CAGTGCG	30	2.1640572E-6	45.000004	1
ACGCTAA	20	7.0310483E-4	45.000004	11
TTACGCG	35	1.2108467E-7	45.000004	1
CGTCGAG	20	7.0310483E-4	45.000004	1
CAATGCG	20	7.0310483E-4	45.000004	1