SRR3554289_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554289_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	340535
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5485	1.610700809021099	No Hit
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	1066	0.31303683909142965	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1051	0.30863200552072473	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	857	0.2516628246729411	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	489	0.1435975744049804	No Hit
AAGGGAGGGCATGCAAAAACTAACATTGAAATTTTGAAACAGCAGCAGAGT	364	0.1068906279824394	No Hit
AAAGCAGGGATAGCAATAATAGCTCTACTAAACCTATTCTTTTATACTCGC	364	0.1068906279824394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCC	35	1.2085547E-7	45.000004	6
GATACGT	25	3.8850034E-5	45.000004	12
GGTACCC	25	3.8850034E-5	45.000004	9
TTGGACC	25	3.8850034E-5	45.000004	19
TCCGATA	25	3.8850034E-5	45.000004	11
CCGATAT	25	3.8850034E-5	45.000004	12
GTTTACC	25	3.8850034E-5	45.000004	10
ATTACGG	70	0.0	45.000004	2
TAGCGCA	25	3.8850034E-5	45.000004	40
ATTACCG	50	2.1827873E-11	45.000004	1
ATCCGAT	25	3.8850034E-5	45.000004	10
TACGCGG	35	1.2085547E-7	45.000004	2
CGCTCCG	35	1.2085547E-7	45.000004	1
CTAGTGA	25	3.8850034E-5	45.000004	30
CGAGGTT	35	1.2085547E-7	45.000004	29
GACGGGT	25	3.8850034E-5	45.000004	4
ATACGTA	25	3.8850034E-5	45.000004	13
CGCAAAC	25	3.8850034E-5	45.000004	24
TCCCACG	25	3.8850034E-5	45.000004	1
CGATAGG	25	3.8850034E-5	45.000004	2