SRR3554288_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554288_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	846306
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3708	0.43813939638854027	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2825	0.33380361240496936	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2038	0.24081124321462924	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1097	0.12962214612681464	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1035	0.12229619073951975	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	860	0.10161809085602606	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	847	0.1000820034361094	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	20	7.03223E-4	45.000004	14
ACGTTAG	20	7.03223E-4	45.000004	1
CCGATAG	20	7.03223E-4	45.000004	1
TCGAGTT	20	7.03223E-4	45.000004	27
AATGTCG	20	7.03223E-4	45.000004	1
CATATCG	25	3.8899307E-5	45.0	1
GGTAACG	25	3.8899307E-5	45.0	1
CGAAACG	25	3.8899307E-5	45.0	1
TAAACCG	35	1.2114288E-7	45.0	1
TTATACG	35	1.2114288E-7	45.0	1
TCGTACT	35	1.2114288E-7	45.0	29
TACAGCG	60	0.0	44.999996	1
GCTCATA	30	2.1648211E-6	44.999996	31
TATACGG	130	0.0	41.53846	2
ATGGGCG	55	6.002665E-11	40.909092	5
TAACGCG	55	6.002665E-11	40.909092	1
CATACCG	50	1.0804797E-9	40.5	1
ATACGCG	45	1.9272193E-8	40.0	1
CGGTAAG	45	1.9272193E-8	40.0	1
AAACGCG	130	0.0	39.80769	1