SRR3554287_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554287_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	825636
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3613	0.4376020425465944	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2827	0.34240270530839256	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1910	0.23133681186382377	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1059	0.12826475589727193	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	984	0.11918084967225265	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	851	0.10307205596655185	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAC	20	7.032129E-4	45.000004	40
CGTATAG	20	7.032129E-4	45.000004	1
ATTCCCG	20	7.032129E-4	45.000004	1
GTAGCGT	20	7.032129E-4	45.000004	26
CGTAGCG	20	7.032129E-4	45.000004	1
TGCGACG	20	7.032129E-4	45.000004	1
GCGATAG	20	7.032129E-4	45.000004	1
TCGTACC	20	7.032129E-4	45.000004	41
GTATACG	40	6.8102963E-9	45.000004	1
CGTAAAG	20	7.032129E-4	45.000004	1
CGGAGTT	20	7.032129E-4	45.000004	23
AAATGCG	30	2.1647556E-6	45.000004	1
CCCGACG	20	7.032129E-4	45.000004	1
TATCACG	25	3.8898484E-5	45.0	1
CATATCG	25	3.8898484E-5	45.0	1
ATCGTAC	35	1.2113742E-7	45.0	28
TAGCACG	35	1.2113742E-7	45.0	1
ATATCCG	25	3.8898484E-5	45.0	1
CGATAAG	25	3.8898484E-5	45.0	1
ACGGGTC	70	0.0	41.785713	5