SRR3554286_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554286_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	588347
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2903	0.49341630024458355	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2305	0.3917756018132157	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1060	0.1801657865171404	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	702	0.11931734163682316	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	669	0.1137084067735537	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	663	0.11268860043477744	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	590	0.10028095664633287	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGCG	25	3.888475E-5	45.000004	1
TAACGCG	25	3.888475E-5	45.000004	1
CCTCGAG	25	3.888475E-5	45.000004	1
ATAGTCG	30	2.163688E-6	45.000004	2
TAAGCGA	25	3.888475E-5	45.000004	27
GATTACG	30	2.163688E-6	45.000004	39
ACGCGAT	40	6.8048394E-9	45.0	25
CCTTACG	40	6.8048394E-9	45.0	1
CTCGTAG	20	7.0304755E-4	45.0	20
CCGATGT	20	7.0304755E-4	45.0	11
TAAACCG	45	3.8380676E-10	45.0	1
CGCGATT	40	6.8048394E-9	45.0	26
TCGATAG	40	6.8048394E-9	45.0	1
TACGCGA	40	6.8048394E-9	45.0	24
ACTAACG	35	1.2105738E-7	45.0	1
CGTACGG	20	7.0304755E-4	45.0	2
CGACTTA	20	7.0304755E-4	45.0	1
GACGAAA	20	7.0304755E-4	45.0	23
CGGTAAT	20	7.0304755E-4	45.0	6
TAATGCG	35	1.2105738E-7	45.0	1