SRR3554284_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554284_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	727598
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2914	0.4004958782184668	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2666	0.36641112262540576	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1538	0.2113804600892251	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1060	0.14568484245421237	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	919	0.12630600963718977	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	906	0.12451930873916642	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	893	0.12273260784114305	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	75	0.0	45.000004	6
TCGGATA	25	3.8893886E-5	45.000004	13
ACTAGCG	25	3.8893886E-5	45.000004	1
ATTGCGT	25	3.8893886E-5	45.000004	33
GATTCGT	25	3.8893886E-5	45.000004	25
TATCGCG	30	2.1643991E-6	45.000004	1
CGATACG	25	3.8893886E-5	45.000004	1
TGCGTCG	25	3.8893886E-5	45.000004	37
TTTAGCG	20	7.031578E-4	45.0	1
CCTACGG	45	3.8380676E-10	45.0	2
ACGATGA	35	1.2111013E-7	45.0	39
CGCTATG	40	6.8084773E-9	45.0	1
CGGTGTA	20	7.031578E-4	45.0	14
ACGTATA	20	7.031578E-4	45.0	42
CGCAATC	20	7.031578E-4	45.0	11
ATACGGA	20	7.031578E-4	45.0	18
CGATATG	20	7.031578E-4	45.0	1
TAATCCG	20	7.031578E-4	45.0	1
ACGCGCT	20	7.031578E-4	45.0	16
ACTACGG	80	0.0	42.1875	2