SRR3554283_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554283_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	712717
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2763	0.38767140393732713	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2532	0.355260222500656	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1456	0.20428865875235191	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1114	0.15630327324870882	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	931	0.13062688275991735	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	915	0.12838195244395742	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	878	0.12319055108830013	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	30	2.1643373E-6	45.000004	1
GGATCGA	25	3.8893082E-5	45.000004	9
CGATTCC	25	3.8893082E-5	45.000004	34
ACTAGCG	25	3.8893082E-5	45.000004	1
CGATATT	25	3.8893082E-5	45.000004	42
TATCACG	45	3.8380676E-10	45.0	1
ACACGAT	20	7.0314814E-4	45.0	18
GTCGATG	20	7.0314814E-4	45.0	1
CGTTATG	20	7.0314814E-4	45.0	1
ACGATAG	20	7.0314814E-4	45.0	1
TCGTAAG	20	7.0314814E-4	45.0	1
GTATACT	20	7.0314814E-4	45.0	37
CGTCCCG	20	7.0314814E-4	45.0	1
TATCGCG	20	7.0314814E-4	45.0	1
CGATAGG	90	0.0	42.5	2
CGAAAGG	85	0.0	42.35294	2
ACGGGCT	240	0.0	41.250004	5
TCATACG	60	3.6379788E-12	41.250004	1
TACTCGC	115	0.0	41.086956	45
AATTGCG	50	1.0804797E-9	40.500004	1