SRR3554282_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554282_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	963073
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3161	0.3282201868394192	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3093	0.3211594552022536	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2460	0.2554323504033443	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1296	0.13456923826127407	No Hit
CACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAA	1209	0.12553565513725334	No Hit
AGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAAGGAAGGTGAA	1091	0.11328320906099539	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	1006	0.10445729451453835	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	30	2.165134E-6	45.000004	1
GTATACG	35	1.211647E-7	45.000004	1
ATACCCG	30	2.165134E-6	45.000004	1
TAATACG	20	7.032717E-4	45.0	1
CACGCTA	20	7.032717E-4	45.0	24
TTATCCG	20	7.032717E-4	45.0	1
TCTAGCG	75	0.0	45.0	1
CGTAGCG	40	6.8139343E-9	45.0	1
TCTCGAC	20	7.032717E-4	45.0	23
CACGTTG	20	7.032717E-4	45.0	1
TCGACGT	20	7.032717E-4	45.0	25
CGTTTAC	25	3.890333E-5	45.0	32
TATACGG	250	0.0	43.199997	2
ATATACG	130	0.0	41.53846	1
AACCGCG	60	3.6379788E-12	41.250004	1
CTTAACG	115	0.0	41.086956	1
CTACGAA	115	0.0	41.086956	10
GTTAGCG	50	1.0804797E-9	40.5	1
TTATACG	50	1.0804797E-9	40.5	1
TCTAACG	100	0.0	40.5	1