SRR3554279_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554279_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	486171
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4895	1.0068473849735997	No Hit
CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT	1395	0.28693607804661325	TruSeq Adapter, Index 20 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	944	0.1941703639254501	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	929	0.19108502975290587	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	512	0.10531273975617633	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGATA	30	2.1629075E-6	45.000004	19
TGACGTC	30	2.1629075E-6	45.000004	31
ACTACCG	30	2.1629075E-6	45.000004	1
GGACGAC	30	2.1629075E-6	45.000004	1
CGATCTG	30	2.1629075E-6	45.000004	1
TGAGACG	35	1.2099918E-7	45.000004	1
TGATCGG	20	7.029267E-4	45.0	2
AACCGGT	25	3.8874736E-5	45.0	3
TCGCAAG	50	2.1827873E-11	45.0	1
ACCGGAA	20	7.029267E-4	45.0	11
TCACCGT	20	7.029267E-4	45.0	14
TCCGACG	40	6.8012014E-9	45.0	1
CCGGCTA	25	3.8874736E-5	45.0	15
CGGTTCG	20	7.029267E-4	45.0	30
GTCTCGC	25	3.8874736E-5	45.0	27
GTCTATC	20	7.029267E-4	45.0	24
TGTATCG	20	7.029267E-4	45.0	18
CGATTCG	25	3.8874736E-5	45.0	17
TCGATAA	25	3.8874736E-5	45.0	21
CCTCGCT	20	7.029267E-4	45.0	28