SRR3554277_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554277_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	361354
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8085	2.2374181550501726	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1609	0.4452697354948333	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1296	0.35865107346258795	No Hit
CTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGCT	1033	0.28586925840034977	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	795	0.22000586682311526	No Hit
GAACTTGGGATGAAACTCAGGAGTTACCTCCCATGCGAGAAATCTTAGATT	680	0.1881811187920986	No Hit
AATCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCT	448	0.12397814885126497	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGT	410	0.11346214515405946	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGAT	25	3.885479E-5	45.000004	36
TCCATCG	25	3.885479E-5	45.000004	30
ACACGAC	35	1.2088458E-7	45.000004	26
CTCGTAG	20	7.026859E-4	45.000004	44
ATAGGTT	25	3.885479E-5	45.000004	10
ACGTTTG	20	7.026859E-4	45.000004	22
CATGCGA	60	0.0	45.000004	32
CTATCGG	30	2.161356E-6	45.000004	2
TAGCGTT	25	3.885479E-5	45.000004	10
CGCATAG	20	7.026859E-4	45.000004	1
TAGCGCG	20	7.026859E-4	45.000004	1
GCACGTT	20	7.026859E-4	45.000004	20
CCTACCG	30	2.161356E-6	45.000004	1
TTACTAG	25	3.885479E-5	45.000004	45
CACGATT	25	3.885479E-5	45.000004	18
ATGTCGC	20	7.026859E-4	45.000004	25
TCGATCA	35	1.2088458E-7	45.000004	17
TGTGATC	20	7.026859E-4	45.000004	34
CGTTAAG	25	3.885479E-5	45.000004	1
AAACGTA	25	3.885479E-5	45.000004	19