SRR3554274_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554274_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527677
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCC	2396	0.4540656500093807	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2175	0.4121839686020047	No Hit
AATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCT	2083	0.3947490605048164	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGT	2044	0.3873581755505735	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	996	0.1887518311391249	No Hit
CTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGCT	719	0.13625759697693854	Illumina Single End Adapter 1 (95% over 21bp)
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	704	0.13341494891761438	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTT	546	0.10347238935939979	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAA	20	7.029812E-4	45.000004	19
AACCGTA	20	7.029812E-4	45.000004	30
TCCATCG	50	2.1827873E-11	45.000004	29
ATTAGCG	20	7.029812E-4	45.000004	1
ACGTTAC	20	7.029812E-4	45.000004	41
TTTCGTA	20	7.029812E-4	45.000004	30
CGGCACG	20	7.029812E-4	45.000004	1
ATAGCCG	20	7.029812E-4	45.000004	1
TAACGCG	30	2.1632604E-6	45.000004	1
ATTCCGG	45	3.8380676E-10	45.000004	2
CAGATAG	25	3.887927E-5	45.000004	1
AACGCCG	20	7.029812E-4	45.000004	29
TCATGCG	25	3.887927E-5	45.000004	1
CGAATAG	30	2.1632604E-6	45.000004	1
CATACCG	25	3.887927E-5	45.000004	1
GTATACG	30	2.1632604E-6	45.000004	1
CGCACCG	40	6.8030204E-9	45.000004	1
CGCACAG	30	2.1632604E-6	45.000004	1
CGACTCG	20	7.029812E-4	45.000004	1
TATCGAG	20	7.029812E-4	45.000004	1