SRR3554273_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554273_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	514212
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCC	2372	0.4612883402176534	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2071	0.40275217225580107	No Hit
AATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCT	2009	0.3906948884895724	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGT	1955	0.3801933832738248	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	961	0.1868878983765451	No Hit
CTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGCT	786	0.15285524258477048	Illumina Single End Adapter 1 (95% over 21bp)
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	709	0.13788087403638966	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTT	583	0.11337736186631195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.029645E-4	45.000004	1
TCGTTCG	20	7.029645E-4	45.000004	45
CGTATGG	20	7.029645E-4	45.000004	2
ATCTACG	45	3.8380676E-10	45.000004	1
TAGCGAG	25	3.887788E-5	45.000004	1
CAACCCG	30	2.163153E-6	45.000004	1
TCTAGCG	35	1.2101737E-7	45.000004	1
CCATGCG	25	3.887788E-5	45.000004	1
AATATCG	20	7.029645E-4	45.000004	1
GTAATCG	25	3.887788E-5	45.000004	1
TAGCACG	25	3.887788E-5	45.000004	1
TACGCCC	30	2.163153E-6	45.000004	38
ATTCACG	30	2.163153E-6	45.000004	1
CACTACG	20	7.029645E-4	45.000004	1
TTGCGTC	20	7.029645E-4	45.000004	15
CGAATAT	20	7.029645E-4	45.000004	13
GCGATGT	20	7.029645E-4	45.000004	9
TTACGTA	20	7.029645E-4	45.000004	40
ATGCGGT	30	2.163153E-6	45.000004	12
GTATACG	25	3.887788E-5	45.000004	1