SRR3554272_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554272_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	645048
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3731	0.5784065681933748	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1878	0.2911411243814414	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1223	0.18959829346033163	No Hit
ACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAGGCTTATCCTGT	819	0.12696729545708227	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	806	0.1249519415609381	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	730	0.11316987262963377	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	727	0.11270479096129281	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	717	0.11115451873348961	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACG	30	2.1640135E-6	45.000004	1
ATTAGCG	25	3.8888946E-5	45.000004	1
AATCACG	25	3.8888946E-5	45.000004	1
CATTGCG	30	2.1640135E-6	45.000004	1
ATAGCGG	60	0.0	45.000004	2
ATAGCCG	25	3.8888946E-5	45.000004	1
TAACGCC	25	3.8888946E-5	45.000004	12
CCGTACA	25	3.8888946E-5	45.000004	23
TCATGCG	25	3.8888946E-5	45.000004	1
ACTACCG	25	3.8888946E-5	45.000004	1
CATACCG	30	2.1640135E-6	45.000004	1
AATCGCG	25	3.8888946E-5	45.000004	1
ACAGTCG	20	7.030982E-4	45.0	1
CGAACTT	20	7.030982E-4	45.0	26
TTAGCCG	20	7.030982E-4	45.0	1
TTATACG	20	7.030982E-4	45.0	1
CGTAGCG	20	7.030982E-4	45.0	1
TTACGCT	20	7.030982E-4	45.0	8
CACGTAT	20	7.030982E-4	45.0	17
ACTCACG	35	1.2108103E-7	45.0	1