SRR3554269_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554269_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	814126
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3325	0.4084134396886968	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1833	0.2251494240449267	No Hit
CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT	1322	0.16238272699803225	TruSeq Adapter, Index 20 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	35	1.2113378E-7	45.0	1
CGAGTAG	20	7.032072E-4	45.0	1
ACCGCAC	20	7.032072E-4	45.0	28
AATGCCG	25	3.8897993E-5	45.0	1
ACGATAG	25	3.8897993E-5	45.0	1
TACGCCC	20	7.032072E-4	45.0	26
ATATACG	25	3.8897993E-5	45.0	1
CAGTCGA	20	7.032072E-4	45.0	31
ATCGGTT	50	2.1827873E-11	45.0	34
TATCGCG	50	2.1827873E-11	45.0	1
TCGAACG	25	3.8897993E-5	45.0	1
CCGCACG	25	3.8897993E-5	45.0	1
AGTCGAG	20	7.032072E-4	45.0	32
CGCGAAG	85	0.0	42.352943	1
ATAGCGG	155	0.0	42.09677	2
CGCCGGT	75	0.0	42.0	28
CGCTAGT	70	0.0	41.785713	13
TGCGGGT	120	0.0	41.250004	4
CAGTACG	60	3.6379788E-12	41.250004	1
TAACACG	55	6.002665E-11	40.909092	1