SRR3554266_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554266_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	802263
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5264	0.6561439328499507	No Hit
CTGTCTCTTATACACATCTGACGCTCTTACCCTCGTATGCCGTCTTCTGCT	2207	0.2750968198707905	TruSeq Adapter, Index 13 (95% over 23bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1079	0.13449454854580106	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	938	0.11691926463017739	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	20	7.03201E-4	45.000004	1
CGACGTA	20	7.03201E-4	45.000004	15
CGTTGAA	20	7.03201E-4	45.000004	30
TCGATTG	20	7.03201E-4	45.000004	1
TTATCCG	30	2.1646774E-6	45.000004	1
CGCCTAC	20	7.03201E-4	45.000004	20
TCGGAGC	30	2.1646774E-6	45.000004	42
TCGGACG	20	7.03201E-4	45.000004	1
TCGTGGC	20	7.03201E-4	45.000004	32
TAACCCG	40	6.8102963E-9	45.000004	1
CGTAGCG	40	6.8102963E-9	45.000004	1
CGCTAGG	20	7.03201E-4	45.000004	2
GTATACG	20	7.03201E-4	45.000004	1
TTACGAG	30	2.1646774E-6	45.000004	1
CCGAACG	40	6.8102963E-9	45.000004	1
ACGACGT	20	7.03201E-4	45.000004	14
GCATCGT	20	7.03201E-4	45.000004	35
TCAACCG	60	0.0	45.000004	1
CCCGCAA	20	7.03201E-4	45.000004	16
ACGCGGT	20	7.03201E-4	45.000004	3