SRR3554264_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554264_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	228531
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6789	2.970712944852121	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1187	0.5194043696478814	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT	1087	0.4756466299976808	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1053	0.4607689985166126	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	574	0.2511694255921516	No Hit
ATAGCAGGGATGAGATGGTTAAAAAGGCCAAAGATAAAAAGATTTTTTTTT	442	0.19340920925388677	No Hit
CTGTCAGGGATTATATCTATTTTTAAGAAAGTACAATGCTGGTTGTCTGGT	372	0.16277879149874636	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT	309	0.13521141551911994	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCC	252	0.1102695039185056	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGT	243	0.10633130734998752	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	25	3.8809667E-5	45.000004	21
GCCTTAG	25	3.8809667E-5	45.000004	32
ACACGTG	25	3.8809667E-5	45.000004	42
AGTCCAC	25	3.8809667E-5	45.000004	28
CAAACCG	25	3.8809667E-5	45.000004	1
CAAGTTC	25	3.8809667E-5	45.000004	27
CTCGTCC	50	2.1827873E-11	45.000004	37
GCAACAG	35	1.2062264E-7	45.000004	1
TATGGGC	25	3.8809667E-5	45.000004	4
GGTCCTA	25	3.8809667E-5	45.000004	8
TGTATCG	25	3.8809667E-5	45.000004	29
TTCAACT	50	2.1827873E-11	45.000004	23
GGGAGCG	25	3.8809667E-5	45.000004	7
AAAGTCG	25	3.8809667E-5	45.000004	1
AATGCGG	25	3.8809667E-5	45.000004	2
TCGGATC	25	3.8809667E-5	45.000004	40
TCGTGGG	25	3.8809667E-5	45.000004	3
AGCATCG	25	3.8809667E-5	45.000004	1
TACGAGG	25	3.8809667E-5	45.000004	2
TAACACG	25	3.8809667E-5	45.000004	1