##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3554263_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 223499 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.09880581121168 33.0 31.0 34.0 30.0 34.0 2 32.30152260189084 34.0 31.0 34.0 30.0 34.0 3 32.4056483474199 34.0 31.0 34.0 30.0 34.0 4 35.95130626982671 37.0 35.0 37.0 35.0 37.0 5 35.762602964666506 37.0 35.0 37.0 35.0 37.0 6 35.74220466310811 37.0 35.0 37.0 33.0 37.0 7 35.74849999328856 37.0 35.0 37.0 35.0 37.0 8 35.89813824670357 37.0 35.0 37.0 35.0 37.0 9 37.527680213334285 39.0 37.0 39.0 35.0 39.0 10 37.08241200184341 39.0 37.0 39.0 33.0 39.0 11 37.068224018899414 39.0 37.0 39.0 33.0 39.0 12 37.13851068684871 39.0 37.0 39.0 33.0 39.0 13 37.11757994442928 39.0 37.0 39.0 33.0 39.0 14 38.346252108510555 40.0 38.0 41.0 34.0 41.0 15 38.36516047051665 40.0 38.0 41.0 34.0 41.0 16 38.355053042742924 40.0 38.0 41.0 34.0 41.0 17 38.24210399151674 40.0 38.0 41.0 33.0 41.0 18 38.128380887610234 40.0 37.0 41.0 33.0 41.0 19 37.99834451160855 40.0 37.0 41.0 33.0 41.0 20 37.9297670235661 40.0 37.0 41.0 33.0 41.0 21 37.82484932818491 40.0 36.0 41.0 33.0 41.0 22 37.80253155495103 39.0 36.0 41.0 33.0 41.0 23 37.65593582074193 39.0 36.0 41.0 33.0 41.0 24 37.64311697144059 39.0 36.0 41.0 33.0 41.0 25 37.54700021029177 39.0 36.0 41.0 33.0 41.0 26 37.47650325057383 39.0 36.0 41.0 33.0 41.0 27 37.4368162721086 39.0 36.0 41.0 33.0 41.0 28 37.33898138246703 39.0 35.0 41.0 32.0 41.0 29 37.22812182604844 39.0 35.0 41.0 32.0 41.0 30 37.14139213150842 39.0 35.0 41.0 32.0 41.0 31 36.994518991136424 39.0 35.0 41.0 31.0 41.0 32 36.88868853999347 39.0 35.0 41.0 31.0 41.0 33 36.81840634633712 39.0 35.0 41.0 31.0 41.0 34 36.653121490476465 39.0 35.0 41.0 31.0 41.0 35 36.56159087960125 39.0 35.0 40.0 31.0 41.0 36 36.46976049109839 39.0 35.0 40.0 30.0 41.0 37 36.42429272614195 39.0 35.0 40.0 30.0 41.0 38 36.37576901910076 39.0 35.0 40.0 30.0 41.0 39 36.31266806562893 38.0 35.0 40.0 30.0 41.0 40 36.19239459684383 38.0 35.0 40.0 30.0 41.0 41 36.12413030930787 38.0 35.0 40.0 30.0 41.0 42 35.993995498861295 38.0 35.0 40.0 30.0 41.0 43 35.94046953230216 38.0 35.0 40.0 30.0 41.0 44 35.87599049660177 38.0 35.0 40.0 30.0 41.0 45 35.72447751444078 38.0 35.0 40.0 29.0 41.0 46 35.53171155128211 38.0 35.0 40.0 28.0 41.0 47 35.48728182229003 38.0 34.0 40.0 28.0 41.0 48 35.41717412605873 38.0 34.0 40.0 27.0 41.0 49 35.321630074407494 38.0 34.0 40.0 27.0 41.0 50 35.21117320435438 38.0 34.0 40.0 27.0 41.0 51 34.250041387209784 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 4.0 12 8.0 13 4.0 14 0.0 15 8.0 16 19.0 17 49.0 18 98.0 19 146.0 20 260.0 21 412.0 22 624.0 23 839.0 24 1115.0 25 1314.0 26 1542.0 27 1811.0 28 2356.0 29 3096.0 30 3873.0 31 5134.0 32 6714.0 33 8866.0 34 12919.0 35 20901.0 36 23216.0 37 29552.0 38 42855.0 39 55736.0 40 23.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.073454467357795 35.69769887113589 21.081973521134323 26.14687314037199 2 18.877936814034964 35.35138859681699 21.443943820777722 24.32673076837033 3 19.285544901766897 36.31067700526624 21.124926733452945 23.278851359513915 4 18.683305070716198 36.5178367688446 18.800531546002443 25.99832661443675 5 16.823788920755796 38.5585617832742 17.540570651322827 27.07707864464718 6 19.511496695734657 40.97512740549175 18.03766459805189 21.475711300721702 7 81.7972339920984 9.68863395361948 4.411205419263621 4.102926635018502 8 82.6052912988425 9.409438073548428 3.746772916209916 4.238497711399156 9 73.95872017324461 15.432731242645382 6.92575805708303 3.6827905270269667 10 25.975507720392482 51.123271245061495 11.932044438677577 10.969176595868438 11 17.2667439227916 31.22340592127929 35.720070335885175 15.789779820043936 12 21.389804876084455 29.07887731041302 33.34511563810129 16.18620217540123 13 20.690472888021873 30.917811712804085 30.71020451993074 17.681510879243305 14 17.275692508691314 32.9983579344874 30.755842308019275 18.970107248802005 15 15.646155016353541 35.47353679434807 30.04398229969709 18.836325889601298 16 17.573232989856777 35.65743023458718 28.115562038308894 18.653774737247147 17 16.90074675949333 36.160788191446045 28.52227526745086 18.416189781609763 18 17.634978232564798 33.6225218009924 29.80102819251988 18.941471773922927 19 16.504771833431022 37.85341321437679 29.079324739708007 16.56249021248417 20 18.093145830630114 36.29904384359662 28.50482552494642 17.10298480082685 21 16.715958460664254 37.916053315674795 27.4820021566092 17.885986067051753 22 16.88150729980895 34.95093937780482 28.536593004890403 19.630960317495827 23 16.496718106121282 36.81179781565018 28.00594186103741 18.685542217191127 24 15.083736392556565 36.58763573886237 28.747332202828645 19.581295665752418 25 15.592463500955262 38.53484803063996 26.384010666714392 19.488677801690386 26 17.221106134703064 38.944693264846826 25.979534584047354 17.85466601640276 27 15.855104497111844 37.19032299920805 26.35134832818044 20.603224175499665 28 16.70566758687958 36.65251298663529 27.734352278981113 18.907467147504015 29 16.825578637935738 36.92633971516651 25.69586441102645 20.5522172358713 30 17.685985172193163 36.70351992626365 25.63456659761341 19.97592830392977 31 16.97412516387098 39.33708875654925 23.634110219732527 20.054675859847247 32 17.075244184537738 37.776455375639266 24.63143011825556 20.516870321567435 33 16.849739819864965 36.4399840715171 24.968344377379765 21.74193173123817 34 15.924456037834622 37.33663237866836 25.575058501380322 21.1638530821167 35 15.791569537223879 37.08965140783628 26.643519657806074 20.47525939713377 36 16.377701913655095 39.47847641376471 25.45112058666929 18.692701085910898 37 16.428261423988474 37.96169110376333 24.863198493058132 20.746848979190062 38 16.25152685246914 36.21358484825436 27.588042899520804 19.946845399755702 39 15.462261576114432 37.1232086049602 25.703470709041206 21.71105910988416 40 18.297621018438562 37.50128635922309 24.948657488400393 19.252435133937958 41 16.15040783180238 35.7348355026197 28.781784258542544 19.332972407035378 42 17.300748549210514 36.774661184166376 27.18983082698357 18.73475943963955 43 16.18843932187616 34.6520566087544 28.524959843220778 20.634544226148662 44 18.677935919176374 35.09366932290525 25.27886030809981 20.949534449818568 45 17.939230153155048 35.89635747810952 26.517792025915103 19.646620342820327 46 15.282842428825186 36.4368520664522 28.78849569796733 19.491809806755285 47 16.175463872321576 36.16884191875579 27.07931579112211 20.576378417800527 48 17.261374771251774 33.76346202891288 30.181790522552674 18.793372677282672 49 17.678378874178406 33.9406440297272 27.184909104738725 21.196067991355665 50 16.470767207012113 33.56838285629913 26.96164188654088 22.999208050147875 51 17.06182130568817 33.253840061924215 28.472610615707456 21.211728016680166 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7321.0 1 5347.0 2 3373.0 3 2122.5 4 872.0 5 809.5 6 747.0 7 912.5 8 1078.0 9 1444.5 10 1811.0 11 2181.0 12 2551.0 13 2799.5 14 3048.0 15 2842.5 16 2637.0 17 2508.5 18 2380.0 19 2219.5 20 2059.0 21 2162.0 22 2265.0 23 2307.5 24 2350.0 25 2496.0 26 3266.5 27 3891.0 28 4856.5 29 5822.0 30 6278.5 31 6735.0 32 7750.0 33 8765.0 34 9035.5 35 9306.0 36 9987.0 37 10668.0 38 11246.0 39 11824.0 40 11418.0 41 11012.0 42 11822.5 43 12633.0 44 13555.0 45 14477.0 46 15998.5 47 17520.0 48 18253.0 49 18986.0 50 17721.5 51 16457.0 52 14194.0 53 11931.0 54 10161.0 55 8391.0 56 7017.0 57 5643.0 58 4891.0 59 4139.0 60 3626.5 61 3114.0 62 2802.5 63 2491.0 64 1988.5 65 1486.0 66 1262.5 67 1039.0 68 844.0 69 649.0 70 556.0 71 463.0 72 385.5 73 308.0 74 272.0 75 201.0 76 166.0 77 144.0 78 122.0 79 92.0 80 62.0 81 37.0 82 12.0 83 8.0 84 4.0 85 4.5 86 5.0 87 4.0 88 3.0 89 2.5 90 2.0 91 1.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 223499.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.06817032738402 #Duplication Level Percentage of deduplicated Percentage of total 1 74.87346797002927 27.005489957449473 2 9.525877040639111 6.871619112389765 3 4.0539869994541755 4.3865968080394095 4 2.3929439785639857 3.452364440109352 5 1.590333945318315 2.86802178085808 6 1.1586364313005508 2.5073937690996377 7 0.8472683967647496 2.13915945932644 8 0.646305760928894 1.8648853015002305 9 0.5334193420334442 1.7315513715945037 >10 3.8728725251823546 27.19430511993342 >50 0.3895201706941894 9.680132797014753 >100 0.10916488860219323 5.67519317759811 >500 0.0012405100977521957 0.28635474879082234 >1k 0.003721530293256587 1.4393800419688678 >5k 0.0012405100977521957 2.897552114327133 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6476 2.897552114327133 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1166 0.5217025579532795 No Hit CTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGCT 1047 0.4684584718499859 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1004 0.44921901216560256 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 640 0.28635474879082234 No Hit ATAGCAGGGATGAGATGGTTAAAAAGGCCAAAGATAAAAAGATTTTTTTTT 426 0.1906048796638911 No Hit AATCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCT 324 0.1449670915753538 No Hit CTGTCAGGGATTATATCTATTTTTAAGAAAGTACAATGCTGGTTGTCTGGT 323 0.14451966228036814 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCC 255 0.11409447022134327 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGT 255 0.11409447022134327 No Hit AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 255 0.11409447022134327 No Hit CCTGTCTCTTATACACATCTGACGCAAGCCCATTCGTATGCCGTCTTCTGC 227 0.1015664499617448 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5606289066170318 0.0 2 0.0 0.0 0.0 0.797319003664446 0.0 3 0.0 0.0 0.0 1.0228233683372185 0.0 4 0.0 0.0 0.0 2.181217813055092 0.0 5 0.0 0.0 0.0 2.3467666521997863 0.0 6 0.0 0.0 0.0 3.4103060863806998 0.0 7 0.0 0.0 0.0 4.266238327688267 0.0 8 0.0 0.0 0.0 5.198680978438382 0.0 9 0.0 0.0 0.0 6.351706271616428 0.0 10 0.0 0.0 0.0 8.180797229517806 0.0 11 0.0 0.0 0.0 9.671631640410023 0.0 12 0.0 0.0 0.0 10.366489335522754 0.0 13 0.0 0.0 0.0 10.68237441778263 0.0 14 0.0 0.0 0.0 10.988416055552822 0.0 15 0.0 0.0 0.0 11.263137642674016 0.0 16 0.0 0.0 0.0 11.76783788741784 0.0 17 0.0 0.0 0.0 12.440324117781287 0.0 18 0.0 0.0 0.0 13.298940934858768 0.0 19 0.0 0.0 0.0 13.66270095168211 0.0 20 0.0 0.0 0.0 14.073441044478946 0.0 21 0.0 0.0 0.0 14.515053758629792 0.0 22 0.0 0.0 0.0 14.983064801184792 0.0 23 0.0 0.0 0.0 15.430941525465439 0.0 24 0.0 0.0 0.0 15.76069691586987 0.0 25 0.0 0.0 0.0 16.101638038648943 0.0 26 0.0 0.0 0.0 16.382623635899936 0.0 27 0.0 0.0 0.0 16.69134984944004 0.0 28 0.0 0.0 0.0 17.02468467420436 0.0 29 0.0 0.0 0.0 17.355782352493748 0.0 30 0.0 0.0 0.0 17.813502521264077 0.0 31 0.0 0.0 0.0 18.149969351093294 0.0 32 0.0 0.0 0.0 18.461380140403314 0.0 33 0.0 0.0 0.0 18.788003525742845 0.0 34 0.0 0.0 0.0 19.109705188837534 0.0 35 0.0 0.0 0.0 19.47078062989096 0.0 36 0.0 0.0 0.0 19.812616611260005 0.0 37 0.0 0.0 0.0 20.174139481608417 0.0 38 0.0 0.0 0.0 20.526266336762134 0.0 39 0.0 0.0 0.0 20.882867484865702 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGGGTA 30 2.1576288E-6 45.000004 5 ACTGCGG 35 1.2060627E-7 45.000004 2 CGAAAAT 30 2.1576288E-6 45.000004 24 CGAAAAG 30 2.1576288E-6 45.000004 1 TGGACGA 30 2.1576288E-6 45.000004 13 TAAACGG 35 1.2060627E-7 45.000004 2 TTCCGTT 30 2.1576288E-6 45.000004 14 CCCACGA 35 1.2060627E-7 45.000004 39 AAAGTCG 35 1.2060627E-7 45.000004 1 GGGACGC 30 2.1576288E-6 45.000004 7 TGCGCGG 35 1.2060627E-7 45.000004 2 CGGGCTA 30 2.1576288E-6 45.000004 6 TAGGGCC 30 2.1576288E-6 45.000004 5 TCCGTTA 30 2.1576288E-6 45.000004 15 GGACGAA 30 2.1576288E-6 45.000004 14 GACGAAC 30 2.1576288E-6 45.000004 15 TTCTGCG 35 1.2060627E-7 45.000004 1 TCTGGGC 35 1.2060627E-7 45.000004 4 GTAACGG 30 2.1576288E-6 45.000004 2 TAGTACG 35 1.2060627E-7 45.000004 1 >>END_MODULE