SRR3554258_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554258_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	588555
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5256	0.8930346356755103	No Hit
CTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGCT	1196	0.20320955560652787	TruSeq Adapter, Index 15 (95% over 23bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1054	0.1790826685696324	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1000	0.16990765518940457	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTACG	35	1.2105738E-7	45.000004	1
ACTAGCG	35	1.2105738E-7	45.000004	1
GCGATGC	45	3.8380676E-10	45.000004	9
TCGAGCT	35	1.2105738E-7	45.000004	16
GCTACGA	35	1.2105738E-7	45.000004	9
CGGAACG	20	7.030478E-4	45.0	1
ACAGTCG	25	3.8884784E-5	45.0	1
CGAACCG	20	7.030478E-4	45.0	1
ATCTACG	20	7.030478E-4	45.0	1
GATCGCG	20	7.030478E-4	45.0	1
CGGCACG	20	7.030478E-4	45.0	1
CCTACGG	55	1.8189894E-12	45.0	2
TAACGCG	20	7.030478E-4	45.0	1
CCTCGCG	20	7.030478E-4	45.0	1
ATCCGTC	25	3.8884784E-5	45.0	44
CGGATTA	20	7.030478E-4	45.0	42
CGTAACG	40	6.8048394E-9	45.0	1
CGCAATG	25	3.8884784E-5	45.0	1
CACGTAC	20	7.030478E-4	45.0	20
GACGAGT	20	7.030478E-4	45.0	9