SRR3554257_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554257_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	575231
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5092	0.8852095940587347	No Hit
CTGTCTCTTATACACATCTGACGCAGTGAGTGTCGTATGCCGTCTTCTGCT	1304	0.2266915378343657	TruSeq Adapter, Index 15 (95% over 23bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1034	0.17975387279197402	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	951	0.1653248868715351	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGA	30	2.1636024E-6	45.000004	1
ACGCACG	30	2.1636024E-6	45.000004	1
TAAACCG	45	3.8380676E-10	45.000004	1
CGCGCAG	45	3.8380676E-10	45.000004	1
TATAGCG	30	2.1636024E-6	45.000004	1
CGCAACG	45	3.8380676E-10	45.000004	1
GCCCGCG	30	2.1636024E-6	45.000004	1
AAACTCG	20	7.0303463E-4	45.0	1
CGGGTAT	80	0.0	45.0	6
CGGCGCG	20	7.0303463E-4	45.0	1
ATCTCGC	20	7.0303463E-4	45.0	10
CTATCCG	20	7.0303463E-4	45.0	1
CGTGCAA	20	7.0303463E-4	45.0	40
TAGACGG	50	2.1827873E-11	45.0	2
TAGACCG	35	1.2105193E-7	45.0	1
CGTTGAC	20	7.0303463E-4	45.0	32
GCGCCTA	25	3.888367E-5	45.0	9
GTTAGTC	35	1.2105193E-7	45.0	30
CGACACG	20	7.0303463E-4	45.0	1
TATGCGG	40	6.8048394E-9	45.0	2