SRR3554256_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554256_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	321841
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5542	1.7219683011176328	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1223	0.3800013049922167	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1168	0.36291212120270566	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	686	0.21314872872008225	No Hit
CTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGCT	614	0.19077743357744972	No Hit
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	375	0.11651716220121115	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	326	0.10129225300691956	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGCG	65	0.0	45.000004	5
CGTACTG	45	3.8380676E-10	45.000004	1
CTGTCGT	20	7.025709E-4	45.0	37
CTCACGG	50	2.1827873E-11	45.0	2
TCCATCG	20	7.025709E-4	45.0	36
GTCGCAT	20	7.025709E-4	45.0	25
ATCTCAC	20	7.025709E-4	45.0	32
CGTATTC	20	7.025709E-4	45.0	24
AATCACG	20	7.025709E-4	45.0	1
GATCGCA	20	7.025709E-4	45.0	34
TACCACG	20	7.025709E-4	45.0	1
CCGATTT	20	7.025709E-4	45.0	18
ACGTTTA	20	7.025709E-4	45.0	35
CGAAACG	20	7.025709E-4	45.0	1
CGGCCGA	20	7.025709E-4	45.0	29
GTTTACG	20	7.025709E-4	45.0	16
CATGACG	20	7.025709E-4	45.0	30
TAGCGTT	35	1.2082819E-7	45.0	17
GACCGAG	25	3.8845254E-5	45.0	16
CAACCCA	20	7.025709E-4	45.0	3