SRR3554254_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3554254_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1132241
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3116	0.2752064269002801	No Hit
CTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGCT	1261	0.11137204888358573	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	25	3.890769E-5	45.0	1
GTCGCTC	20	7.033243E-4	45.0	28
GAGTACG	20	7.033243E-4	45.0	1
CGTTATC	20	7.033243E-4	45.0	38
TGTTACG	25	3.890769E-5	45.0	1
CGCGTAA	20	7.033243E-4	45.0	31
TCAACCG	55	1.8189894E-12	45.0	1
ATATCCG	115	0.0	43.04348	1
AATTGCG	95	0.0	42.63158	1
TACACCG	85	0.0	42.35294	1
CGTACCG	60	3.6379788E-12	41.250004	1
AGTACGG	170	0.0	41.02941	2
TAATCCG	55	6.184564E-11	40.909092	1
TCACGCG	100	0.0	40.5	1
CTAACGG	190	0.0	40.26316	2
TAACCCG	45	1.9283107E-8	40.000004	1
TAGTACG	45	1.9283107E-8	40.000004	1
ATATGCG	40	3.4581535E-7	39.375	1
TGTAGCG	40	3.4581535E-7	39.375	1
CAATGCG	40	3.4581535E-7	39.375	1